GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS ALRRSV6 9312 bp ds-DNA VRL 28-MAY-1991
DEFINITION Rous sarcoma virus genome, strain Prague C (Pr-C).
ACCESSION V01197
KEYWORDS coat protein; endonuclease; oncogene; reverse transcriptase.
SOURCE Rous sarcoma virus DNA.
ORGANISM Rous sarcoma virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Retroviridae; Oncovirinae; Type C oncovirus group;
Avian sarcoma viruses.
REFERENCE 1 (bases 1 to 9312)
AUTHORS Schwartz,D.E., Tizard,R. and Gilbert,W.
TITLE Nucleotide sequence of Rous sarcoma virus
JOURNAL Cell 32, 853-869 (1983)
STANDARD full automatic
COMMENT EPD; 07126; RSV LTR. SWISS-PROT; P00526; KSRC$RSVP. SWISS-PROT;
P03322; GAG$RSVP. SWISS-PROT; P03354; POL$RSVP. SWISS-PROT; P03396;
ENV$RSVP.
From EMBL entry RERSV6; dated 13-JUL-1983.
FEATURES Location/Qualifiers
precursor_RNA 22..101
/note="U5 RNA"
CDS 380..2482
/note="polyprotein gag"
/codon_start=380
CDS 380..904
/note="reading frame p19"
/codon_start=380
CDS 911..1096
/note="reading frame p10"
/codon_start=911
CDS 1097..1816
/note="reading frame p27"
/codon_start=1097
CDS 1844..2110
/note="reading frame p12"
/codon_start=1844
CDS 2111..2482
/note="reading frame p15"
/codon_start=2111
CDS 2503..5187
/note="pol (reverse transcriptase)"
/codon_start=2503
CDS 5054..6862
/note="reading frame env (envelope protein)"
/codon_start=5054
CDS 7129..8706
/note="transforming gene src"
/codon_start=7129
precursor_RNA 9058..9201
/note="U3 RNA"
BASE COUNT 2212 a 2359 c 2681 g 2060 t
ORIGIN
1 gccattttac cattcaccac attggtgtgc acctgggttg atggccggac cgtcgattcc
61 ctaacgattg cgaacacctg aatgaagcag aaggcttcat ttggtgaccc cgacgtgata
121 gttagggaat agtggtcggc cacagacggc gtggcgatcc tgccctcatc cgtctcgctt
181 attcggggag cggacgatga ccctagtaga gggggctgcg gcttaggagg gcagaagctg
241 agtggcgtcg gagggagctc tactgcaggg agcccagata ccctaccgag aactcagaga
301 gtcgttggaa gacgggaagg aagcccgacg actgagcagt ccaccccagg cgtgattctg
361 gtcgcccggt ggatcaagca tggaagccgt cataaaggtg atttcgtccg cgtgtaaaac
421 ctattgcggg aaaacctctc cttctaagaa ggaaataggg gccatgttgt ccctcttaca
481 aaaggaaggg ttgcttatgt ctccctcaga cttatattcc ccggggtcct gggatcccat
541 taccgcggcg ctatcccagc gggctatgat acttgggaaa tcgggagagt taaaaacctg
601 gggattggtt ttgggggcat tgaaggcggc tcgagaggaa caggttacat ctgagcaagc
661 aaagttttgg ttgggattag ggggagggag ggtctctccc ccaggtccgg agtgcatcga
721 gaaaccagca acggagcggc gaatcgacaa aggggaggaa gtgggagaaa caactgtgca
781 gcgagatgcg aagatggcgc cggaggaaac ggccacacct aaaaccgttg gcacatcctg
841 ctatcattgc ggaacagcta ttggctgtaa ttgcgccaca gcctcggctc ctcctcctcc
901 ttatgtgggg agtggtttgt atccttccct ggcgggggtg ggagagcagc agggccaggg
961 gggtgacaca cctccggggg cggaacagtc aagggcggag ccagggcatg cgggtcaggc
1021 tcctgggccg gccctgactg actgggcaag ggtcagggag gagcttgcga gtactggtcc
1081 gcccgtggtg gccatgcctg tagtgattaa gacagaggga cccgcttgga cccctctgga
1141 gccaaaattg atcacaagac tggctgatac ggtcaggacc aagggcttac gatccccgat
1201 tactatggca gaagtggaag cgcttatgtc ctccccgctg ctgccgcatg acgtcacgaa
1261 tctaatgaga gttattttag ggcctgcccc atatgcctta tggatggacg cttggggagt
1321 ccaactccag acagttatag cggcagccac tcgcgacccc cgacacccag cgaacggtca
1381 agggcggggg gaacggacta atttgaatcg cttaaagggc ttagctgatg ggatggtggg
1441 caacccacag ggtcaggccg cattattaag accgggggaa ttggttgcta ttacggcgtc
1501 ggctctccag gcgtttagag aggttgcccg gctggcggaa cctgcaggtc catgggcgga
1561 catcatgcag ggaccatctg agtcctttgt tgattttgcc aatcggctta taaaggcggt
1621 tgaggggtca gatctcccgc cttccgcgcg ggctccggtg atcattgact gctttaggca
1681 gaagtcacag ccagatattc agcagcttat acggacagca ccctccacgc tgaccacccc
1741 aggagagata attaaatatg tgctagacag gcagaagact gcccctctta cggatcaagg
1801 catagccgcg gccatgtcgt ctgctatcca gcccttaatt atggcagtag tcaatagaga
1861 gagggatgga caaactgggt cgggtggtcg tgcccgaggg ctctgctaca cttgtggatc
1921 cccgggacat tatcaggcgc agtgcccgaa aaaacggaag tcaggaaaca gccgtgagcg
1981 atgtcagttg tgtaacggga tgggacacaa cgctaaacag tgtaggaagc gggatggcaa
2041 ccagggccaa cgcccaggaa aaggtctctc ttcggggccg tggcccggcc ctgagccacc
2101 tgccgtctcg ttagcgatga caatggaaca taaagatcgc cccttggtta gggtcattct
2161 gactaacact gggagtcatc cggtcaaaca gcgttcggtg tatatcaccg cgctgttgga
2221 ctctggagcg gacatcacta ttatttcaga ggaggattgg cccaccgatt ggccagtgat
2281 ggaggccgcg aacccgcaga tccatgggat aggaggggga attcccatgc gaaaatctcg
2341 tgacatgata gagttggggg ttattaaccg agacgggtct ttggagcgac ccctgctcct
2401 cttccccgca gtagctatgg ttagagggag tatcctagga agagattgtc tgcagggcct
2461 agggctccgc ttgacaaatt tatagggagg gccactgttc tcactgttgc gctacatctg
2521 gctattccgc tcaaatggaa gccagaccac acgcctgtgt ggattgacca gtggcccctc
2581 cctgaaggta aacttgtagc gctaacgcaa ttagtggaaa aagaattaca gttaggacat
2641 atagaacctt cacttagttg ttggaacaca cctgtcttcg tgatccggaa ggcttccggg
2701 tcttaccgct tactgcatga tttgcgcgct gttaacgcca agcttgttcc ttttggggcc
2761 gtccaacagg gggcgccagt tctctccgcg ctcccgcgtg gctggcccct gatggtctta
2821 gacctcaagg attgcttctt ttctatccct cttgcggaac aagatcgcga agcttttgca
2881 tttacgctcc cctctgtgaa taaccaggcc cccgctcgaa gattccaatg gaaggtcttg
2941 ccccaaggga tgacctgttc tcccactatc tgtcagttgg tagtgggtca ggtacttgag
3001 cccttgcgac tcaagcaccc atctctgtgc atgttgcatt atatggatga tcttttgcta
3061 gccgcctcaa gtcacgatgg gttggaagcg gcaggggagg aggttatcag tacattggaa
3121 agagccgggt tcactatttc gcctgataag gtccagaggg agcccggagt acaatatctt
3181 gggtacaagt taggcagtac gtatgtagca cccgtaggcc tggtagcaga acccaggata
3241 gccaccttgt gggatgttca aaagctggtg gggtcacttc agtggcttcg cccagcgtta
3301 ggaatcccgc cacgactgat gggccccttc tatgagcagt tacgagggtc agatcctaac
3361 gaggcgaggg aatggaatct agacatgaaa atggcctgga gagagatcgt acggcttagc
3421 accactgctg ccttggaacg atgggaccct gccctgcctc tggaaggagc ggtcgctaga
3481 tgtgaacagg gggcaatagg ggttttggga cagggactgt ccacacaccc aaggccatgc
3541 ttgtggttat tctccaccca acccaccaag gcgtttactg cttggttaga agtgctcacc
3601 cttttgatta ctaagctacg tgcttcggca gtgcgaacct ttggcaagga ggtcgatatc
3661 ctcctgttgc ctgcatgctt tcgggaggac cttccgctcc cagaggggat cctgttagcc
3721 cttaaggggt ttgcaggaaa aatcaggagt agtgacacgc catctatttt tgacattgcg
3781 cgtccactgc atgtttctct gaaagtgagg gttaccgacc accctgtgcc gggacccact
3841 gtctttactg acgcctcctc aagcacccat aagggggtgg tagtctggag ggagggccca
3901 aggtgggaga taaaagaaat agctgatttg ggggcaagtg tacaacaact ggaagcacgc
3961 gctgtggcca tggcacttct gctgtggccg acaacgccca ctaatgtagt gactgactcc
4021 gcgtttgttg cgaaaatgtt actcaagatg ggacaggagg gagtcccgtc tacagcggcg
4081 gcttttattt tagaggatgc gttaagccaa aggtcagcca tggccgccgt tctccacgtg
4141 cggagtcatt ctgaagtgcc agggtttttc acagaaggaa atgacgtggc agatagccaa
4201 gccaccttcc aagcgtatcc cttgagagag gctaaagatc ttcataccgc tctccatatt
4261 ggaccccgcg cgctatccaa agcgtgtaat atatctatgc agcaggctag ggaggttgtt
4321 cagacctgcc cgcattgtaa ttcagcccct gcgttggagg ccggagtaaa ccctaggggt
4381 ttgggacccc tacagatatg gcagacagac tttacgcttg agcctagaat ggccccccgt
4441 tcctggctcg ctgttactgt ggataccgcc tcatcagcga tagtcgtaac tcagcatggc
4501 cgtgtcacat cggttgctgt acaacatcat tgggccacgg ctatcgccgt tttgggaaga
4561 ccaaaggcca taaaaacaga taatgggtcc tgcttcacgt ctaaatccac gcgagagtgg
4621 ctcgcgagat gggggatagc acacaccacc gggattccgg gtaattccca gggtcaagct
4681 atggtagagc gggccaaccg gctcctgaaa gataggatcc gtgtgcttgc ggagggggac
4741 ggctttatga aaagaatccc caccagcaaa cagggggaac tattagccaa ggcaatgtat
4801 gccctcaatc actttgagcg tggtgaaaac acgaaaacac cgatacaaaa acactggaga
4861 cctaccgttc ttacagaagg acccccggtt aaaatacgaa tagagacagg ggagtgggaa
4921 aaaggatgga acgtgctggt ctggggacga ggttatgccg ctgtgaaaaa cagggacact
4981 gataaggtta tttgggtacc ctctcgaaaa gttaaaccgg acatcaccca aaaggatgag
5041 gtgactaaga aagatgaggc gagccctctt tttgcaggca tttctgactg gataccctgg
5101 gaagacgagc aagaaggact ccaaggagaa accgctagca acaagcaaga aagacccgga
5161 gaagacaccc ttgctgccaa cgagagttaa ttatattctc attattggtg tcctggtctt
5221 gtgtgaggtt acgggggtaa gagctgatgt tcacttactc gagcagccag ggaacctttg
5281 gattacatgg gccaaccgta caggccaaac ggatttctgc ctctctacac agtcagccac
5341 ctcccctttt caaacatgtt tgataggtat cccgtctcct atttccgaag gtgattttaa
5401 gggatatgtt tctgatacaa attgctccac tgtgggaact gaccggttag tcttgtcagc
5461 cagcattacc ggcggccctg acaacagcac caccctcact tatcgaaagg tttcatgcct
5521 gctgttaaag ctgaacgtct ccatgtggga tgagccacct gaactgcagc tgctaggttc
5581 ccagtctctc cctaacgtta ctaacattac tcaggtctct ggcgtggccg ggggatgtgt
5641 atatttcgcc ccaagggcca ctggcctgtt tttaggttgg tctaaacaag gtctctcgcg
5701 gttcctcctc cgtcacccct ttacctccac ctctaactcc acggaaccgt tcacggtggt
5761 gacagcggat agacacaatc tttttatggg gagtgagtac tgtggtgcat atggctacag
5821 attttgggaa atatataact gctcacagac taggaatact taccgctgtg gagacgtggg
5881 aggtactggc ctccctgaaa cctggtgcag aggaaaagga ggtatatggg ttaatcaatc
5941 aaaggaaatt aatgagacag agccgttcag ttttactgcg aactgtactg gcagtaattt
6001 gggtaatgtc agcggatgtt gcggagaacc aatcacgatt ctcccactag gggcatggat
6061 cgacagtacg caaggtagtt tcactaaacc aaaagcgcta ccacccgcaa ttttcctcat
6121 ttgtggggat cgcgcatggc aaggaattcc cagtcgtccg gtagggggcc cctgctattt
6181 aggcaagctt accatgttag cacccaacca tacagatatt ctcaaaatac ttgctaattc
6241 gtcgcggaca ggtataagac gtaaacgaag cgtctcacac ctggatgata catgctcaga
6301 tgaagtacag ctttggggtc ctacagcaag aatctttgca tctatcttag ccccgggggt
6361 agcagctgcg caagccttaa gagaaattga gagactagcc tgttggtccg ttaaacaggc
6421 taacttgaca acatcactcc tcggggactt attggatgat gtcacgagta ttcgacacgc
6481 ggtcctgcag aaccgagcgg ctattgactt cttgcttcta gctcacggcc atggctgtga
6541 ggacgttgcc ggaatgtgtt gtttcaatct gagtgatcac agtgaatcta tacagaagaa
6601 gttccagcta atgaagaaac atgtcaataa gatcggcgtg gacagcgacc caatcggaag
6661 ttggctgcga gggatattcg ggggaatagg ggaatgggcc gttcatctgc taaaaggact
6721 gcttttgggg cttgtagtta ttttattgct actggtgtgc ctgccttgcc ttttacaatt
6781 tgtgtctagt agtattcgaa agatgattaa tagttcaatc aactatcata ctgaatacag
6841 gaagatgcag ggcggagcag tctagagctc agttataata atcctgcgaa tcgggctgta
6901 acggggcaag gcttgaccga ggggactata acatgtatag gcgaaaagcg gggtctcggt
6961 tgtaacgcgc ttaggaagtc ccctcgaggt atggcagata tgctcttgca tagggggaaa
7021 aaatgtagtc ttaatattgt ctgtgtgctg caggagctaa gctgactctg ctggtggcct
7081 cgcgtaccac tgtggccagg cggtagctgg gacgtgcagc cgaccaccat ggggagcagc
7141 aagagcaagc ctaaggaccc cagccagcgc cggcacagcc tggagccacc cgacagcacc
7201 caccacgggg gattcccagc ctcgcagacc cccgacgaga cagcagcccc cgacgcacac
7261 cgcaacccca gccgctcctt cgggaccgtg gccaccgagc ccaagctctt ctggggcttc
7321 aacacttctg acaccgtcac gtcgccgcag cgtgccgggg cactggctgg cggcgtcacc
7381 actttcgtgg ctctctacga ctacgagtcc tggactgaaa cggacttgtc cttcaagaaa
7441 ggagaacgcc tgcagattgt caacaacacg gaaggtgact ggtggctggc tcattccctc
7501 actacaggac agacgggcta catccccagt aactatgtcg cgccctcaga ctccatccag
7561 gctgaagagt ggtactttgg gaagatcact cgtcgggagt ccgagcggct gctgcttaac
7621 cccgaaaacc cccggggaac cttcttggtc cggaagagcg agacggcaaa gggtgcctat
7681 tgcctctccg tttctgactt tgacaacgcc aaggggccca atgtgaagca ctacaagatc
7741 tacaagctgt acagcggcgg cttctacatc acctcacgca cacagttcgg cagcctacag
7801 cagctggtgg cctactactc caaacatgct gatggcttgt gccaccgcct ggccaacgtc
7861 tgccccacgt ccaagcccca gacccaggga ctcgccaagg acgcgtggga aatcccccgg
7921 gagtcgctac ggctggaggc gaagctgggg cagggctgct ttggagaggt ctggatgggg
7981 acctggaacg acaccaccag agtggccata aagactctga agcccggcac catgtccccg
8041 gaggccttcc tgcaggaagc ccaagtgatg aagaagctcc ggcatgagaa gctggttcag
8101 ctgtacgcag tggtgtcgga agagcccatc tacatcgtca ttgagtacat gagcaagggg
8161 agcctcctgg atttcctgaa gggagagatg ggcaagtacc tgcggctgcc acagctcgtc
8221 gatatggctg ctcagattgc atccggcatg gcctatgtgg agagaatgaa ctacgtgcac
8281 cgagacctgc gggcggccaa catcctggtg ggggagaacc tggtgtgcaa ggtggctgac
8341 ttcgggctgg cacgcctcat cgaggacaac gagtacacag cacggcaagg tgccaagttc
8401 cccatcaagt ggacagcccc cgaggcagcc ctctatggcc ggttcaccat caagtcggat
8461 gtctggtcct tcggcatcct gctgactgag ctgaccacca agggccgggt gccataccca
8521 gggatggtca acagggaggt gctggaccag gtggagaggg gctaccgcat gccctgcccg
8581 cccgagtgcc ccgagtcgct gcatgacctc atgtgccagt gctggcggaa ggaccctgag
8641 gagcggccca cctttaagta cctgcaggcc cagctgctcc ctgcttgtgt gttggaggtc
8701 gctgagtaag tacgaggcgt gacctacaat tgctcaaata atgcttctgt agaaattgtt
8761 tagcattagg cgtcctgcgt tgctccgcga tgtacgggtc aggtataatg tgcagtttga
8821 ctgaggggac catgatgtgt ataggcgtca agcggggctt cggttgtacg cggataggaa
8881 tcccctcagg acaattctgc ttggaatatg atggcgtctt ccctgttttg cccttagact
8941 attcgagttg cctctgtgga ttagggctgg aggcagcacg gatagtctga tggccaaata
9001 aggcaggcaa gacagctatt tgtaactgcg aaatacgctt ttgcataggg agggggaaat
9061 gtagtcttat gcaatactcc tgtagtcttg caacatgctt atgtaacgat gagttagcaa
9121 tatgccttac aaggaaagaa aaggcaccgt gcatgccgat tggtggtagt aaggtggtac
9181 gatcgtgcct tattaggaag gtatcagacg ggtctaacat ggattggacg aaccactgaa
9241 ttccgcatcg cagagatatt gtatttaagt gcctagctcg atacaataaa cgccatttta
9301 ccattcacca ca
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