GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS SNVSNVX 1530 bp ds-DNA VRL 28-MAY-1991
DEFINITION Spleen necrosis virus sequence from the end of the U3 region to
1.92Kbp from the 5' end.
ACCESSION V01200
KEYWORDS integration site; provirus; terminal repeat.
SOURCE Spleen necrosis virus DNA.
ORGANISM Spleen necrosis virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Retroviridae; Oncovirinae; Type C oncovirus group;
Mammalian type C oncoviruses.
REFERENCE 1 (bases 2 to 470)
AUTHORS Shimotohno,K., Mizutani,S. and Temin,H.M.
TITLE Sequence of retrovirus provirus resembles that of bacterial
transposable elements
JOURNAL Nature 285, 550-554 (1980)
STANDARD full automatic
REFERENCE 2 (bases 1 to 1530)
AUTHORS O'Rear,J.J. and Temin,H.M.
TITLE Spontaneous changes in nucleotide sequence in proviruses of spleen
necrosis virus, an avian retrovirus
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79, 1230-1234 (1982)
STANDARD full automatic
COMMENT The meaning of the substitution at 739-749 is not completely clear
in [2].
From EMBL entry RESNVX; dated 03-NOV-1982.
FEATURES Location/Qualifiers
mutation 313..313
/note="T is missing in clone 13"
mutation 314..314
/note="G is missing in clone 13"
mutation 315..315
/note="G is missing in clone 13"
mutation 327..327
/note="T is missing in clone 13"
mutation 367..367
/note="G is A in clone 14-44"
variation 367..367
/note="A may be G"
mutation 374..374
/note="C is T in clone 13"
mutation 374..374
/note="C is T in clone 32"
mutation 375..375
/note="T is C in clone 13"
mutation 375..375
/note="T is C in clone 32"
mutation 383..383
/note="A is T in clone 13"
mutation 383..383
/note="A is T in clone 32"
mutation 474..474
/note="G is A in clone 13"
CDS 592..>1530
/note="reading frame (gag?)"
/codon_start=592
mutation 594..594
/note="G is A in clone 63"
mutation 732..732
/note="G is C in clone 13"
mutation 739..749
/note="substitute with 135-188 in clone 13"
mutation 949..949
/note="A is G in clone 63"
mutation 1029..1029
/note="C is A in clone 32"
mutation 1085..1085
/note="A is G in clone 13"
mutation 1122..1122
/note="A is G in clone 3-73"
mutation 1192..1192
/note="additional C in clone 3-73"
BASE COUNT 344 a 389 c 432 g 365 t
ORIGIN
1 tcggggtcgc cgtcctgcac attgttgttg tgacgtgcgg cccagattcg aatctgtaat
61 aaaacctttt cttctgaatc ctcagattgg cagtgagagg agattttgtt cgtggtgttg
121 gctggcctac tgggtgggcg cagggatccg gactgaatcc gtagtacttc ggtacaacat
181 ttgggggctc gtccgggata ccctccccat cggcagaggt gccaactgct tcttcgaact
241 ttcttcgaac tccggcgccg gtgagttaag tacttgattt tggtacctcg cgagggtttg
301 ggaggatcgg agtggtggcg ggacgctgcc gggaagctcc acctccgctc agcaggggac
361 gccctgacct gagctctgtg gtatctgatt gttgttgagc cgtccctaag acggtgatac
421 taagtcgtgg cttgtgtgtt tgtttgttgc cttgtgtttg ttcgtcgttt gtcgacagcg
481 ccttgcgaat tggtgtaccc acaccgcgcg gcttgcgaat aatactttgg agagcctttt
541 gcctccagtg tcttccgtct gtactcgtcc tcctctccct ctccggccgg gatgggacag
601 gcaggatcga aggggctttt aacccctcta gagtgcattc tgaagaactt ctctgacttt
661 aagaagaggg cgggagacta tggggaggat gtggattcgt ttgctctgcg caagttatgt
721 gaattggaat ggcccacgtt tggcgtaggg tggccgaagg aagggactct agactttaag
781 gtggtagccg cggtcaggaa tatagttttt gggaatccag ggcatccaga ccaggtgata
841 tatataaccg tctggacaga tataaccata gaaaggccta aatacttgaa aagttgcggg
901 tgtaaacccc acaggacctc taaagttctg ttagctagcc aaaaagttaa tcctaggcgg
961 cccgtgctcc cctcagcccc agaaagcccg cctcggataa ggagggctca attcctggat
1021 gagagacccc tctctccggc cccagcccct ccacctccat atcctgaagt atctgccatt
1081 gtagaggaca ctcgggaggg gcaacaacca gactctactg taatgacgag ccctccccac
1141 acccgaagtg ggttagagtt cggagcacaa gggccgtcag ggatgtaccc ccttagggaa
1201 actggggaac gggatatgac tggccgcccc atgagaacat atgttccatt caccacctcg
1261 gatctgtata attggaaaaa ccaaaaccca tcatcattct cccaggctcc agatcaagta
1321 attagcctat tagaatccgt tttctacaca caccagccta cctgggatga ttgccagcaa
1381 ctcctccgta ccctgttcac gacggaggaa agggagaggg taaggacaga aagtaggcgg
1441 gaggtcagga atgatcaggg agtacaggtc actgacgagc gagaaataga agcccagttc
1501 ccagcgactc ggcccgactg ggtaggatcc
//