GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS SNVSNVX 1530 bp ds-DNA VRL 28-MAY-1991 DEFINITION Spleen necrosis virus sequence from the end of the U3 region to 1.92Kbp from the 5' end. ACCESSION V01200 KEYWORDS integration site; provirus; terminal repeat. SOURCE Spleen necrosis virus DNA. ORGANISM Spleen necrosis virus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Retroviridae; Oncovirinae; Type C oncovirus group; Mammalian type C oncoviruses. REFERENCE 1 (bases 2 to 470) AUTHORS Shimotohno,K., Mizutani,S. and Temin,H.M. TITLE Sequence of retrovirus provirus resembles that of bacterial transposable elements JOURNAL Nature 285, 550-554 (1980) STANDARD full automatic REFERENCE 2 (bases 1 to 1530) AUTHORS O'Rear,J.J. and Temin,H.M. TITLE Spontaneous changes in nucleotide sequence in proviruses of spleen necrosis virus, an avian retrovirus JOURNAL Proc. Natl. Acad. Sci. U.S.A. 79, 1230-1234 (1982) STANDARD full automatic COMMENT The meaning of the substitution at 739-749 is not completely clear in [2]. From EMBL entry RESNVX; dated 03-NOV-1982. FEATURES Location/Qualifiers mutation 313..313 /note="T is missing in clone 13" mutation 314..314 /note="G is missing in clone 13" mutation 315..315 /note="G is missing in clone 13" mutation 327..327 /note="T is missing in clone 13" mutation 367..367 /note="G is A in clone 14-44" variation 367..367 /note="A may be G" mutation 374..374 /note="C is T in clone 13" mutation 374..374 /note="C is T in clone 32" mutation 375..375 /note="T is C in clone 13" mutation 375..375 /note="T is C in clone 32" mutation 383..383 /note="A is T in clone 13" mutation 383..383 /note="A is T in clone 32" mutation 474..474 /note="G is A in clone 13" CDS 592..>1530 /note="reading frame (gag?)" /codon_start=592 mutation 594..594 /note="G is A in clone 63" mutation 732..732 /note="G is C in clone 13" mutation 739..749 /note="substitute with 135-188 in clone 13" mutation 949..949 /note="A is G in clone 63" mutation 1029..1029 /note="C is A in clone 32" mutation 1085..1085 /note="A is G in clone 13" mutation 1122..1122 /note="A is G in clone 3-73" mutation 1192..1192 /note="additional C in clone 3-73" BASE COUNT 344 a 389 c 432 g 365 t ORIGIN 1 tcggggtcgc cgtcctgcac attgttgttg tgacgtgcgg cccagattcg aatctgtaat 61 aaaacctttt cttctgaatc ctcagattgg cagtgagagg agattttgtt cgtggtgttg 121 gctggcctac tgggtgggcg cagggatccg gactgaatcc gtagtacttc ggtacaacat 181 ttgggggctc gtccgggata ccctccccat cggcagaggt gccaactgct tcttcgaact 241 ttcttcgaac tccggcgccg gtgagttaag tacttgattt tggtacctcg cgagggtttg 301 ggaggatcgg agtggtggcg ggacgctgcc gggaagctcc acctccgctc agcaggggac 361 gccctgacct gagctctgtg gtatctgatt gttgttgagc cgtccctaag acggtgatac 421 taagtcgtgg cttgtgtgtt tgtttgttgc cttgtgtttg ttcgtcgttt gtcgacagcg 481 ccttgcgaat tggtgtaccc acaccgcgcg gcttgcgaat aatactttgg agagcctttt 541 gcctccagtg tcttccgtct gtactcgtcc tcctctccct ctccggccgg gatgggacag 601 gcaggatcga aggggctttt aacccctcta gagtgcattc tgaagaactt ctctgacttt 661 aagaagaggg cgggagacta tggggaggat gtggattcgt ttgctctgcg caagttatgt 721 gaattggaat ggcccacgtt tggcgtaggg tggccgaagg aagggactct agactttaag 781 gtggtagccg cggtcaggaa tatagttttt gggaatccag ggcatccaga ccaggtgata 841 tatataaccg tctggacaga tataaccata gaaaggccta aatacttgaa aagttgcggg 901 tgtaaacccc acaggacctc taaagttctg ttagctagcc aaaaagttaa tcctaggcgg 961 cccgtgctcc cctcagcccc agaaagcccg cctcggataa ggagggctca attcctggat 1021 gagagacccc tctctccggc cccagcccct ccacctccat atcctgaagt atctgccatt 1081 gtagaggaca ctcgggaggg gcaacaacca gactctactg taatgacgag ccctccccac 1141 acccgaagtg ggttagagtt cggagcacaa gggccgtcag ggatgtaccc ccttagggaa 1201 actggggaac gggatatgac tggccgcccc atgagaacat atgttccatt caccacctcg 1261 gatctgtata attggaaaaa ccaaaaccca tcatcattct cccaggctcc agatcaagta 1321 attagcctat tagaatccgt tttctacaca caccagccta cctgggatga ttgccagcaa 1381 ctcctccgta ccctgttcac gacggaggaa agggagaggg taaggacaga aagtaggcgg 1441 gaggtcagga atgatcaggg agtacaggtc actgacgagc gagaaataga agcccagttc 1501 ccagcgactc ggcccgactg ggtaggatcc //