GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS RATRC041 7140 bp ds-DNA ROD 28-MAY-1991
DEFINITION Rat RCO4-1 gene for cytochrome c oxidase subunit IV (EC 1.9.3.1)
ACCESSION X54081
KEYWORDS cytochrome c oxidase; cytochrome c oxidase subunit IV.
SOURCE Rattus norvegicus DNA.
ORGANISM Rattus norvegicus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (bases 1 to 7140)
AUTHORS Virbasius,J.V.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (sites)
AUTHORS Virbasius,J.V. and Scarpulla,R.C.
TITLE The rat cytochrome c oxidase subunit IV gene family: Tissue-
specific and hormonal differences in subunit IV and cytochrome c
mRNA expression
JOURNAL Nucleic Acids Res. 18, 6581-6586 (1990)
STANDARD full staff_review
COMMENT *source: strain=Sprague Dawley; developmental stage=adult; *source:
library=liver genomic; See X54081-X54083 for associated RCO4
sequences.
Data kindly reviewed (10-JAN-1991) by Virbasius J.V.
From EMBL entry RNRC041; dated 10-JAN-1991.
FEATURES Location/Qualifiers
mat_peptide join(1726..1798,5103..5270,5662..5793,6670..6803)
/product="cytochrome c oxidase subunit IV"
/gene="RCO4-1"
mRNA join(669..756,1725..1798,5103..5270,5662..5793,6670..6903)
/gene="RCO4-1"
CDS join(1726..1798,5103..5270,5662..5793,6670..6806)
/product="cytochrome c oxidase subunit IV"
/gene="RCO4-1"
/codon_start=1726
exon 669..756
/number=1
exon 669..756
prim_transcript 669..6903
/gene="RCO4-1"
intron 757..1724
/number=1
exon 1725..1798
/number=2
exon 1725..1798
intron 1799..5102
/number=2
exon 5103..5270
/number=3
exon 5103..5270
exon 5103..5270
exon 5103..5270
intron 5271..5661
/number=3
exon 5662..5793
/number=4
exon 5662..5793
exon 5662..5793
exon 5662..5793
intron 5794..6669
/number=4
exon 6670..6903
/number=5
exon 6670..6903
polyA_signal 6883..6888
polyA_site 6903..6903
BASE COUNT 1404 a 1763 c 2020 g 1953 t
ORIGIN
1 ggatccgctt gcctccctat cccgagcgct gcctttaaga atgtacacca cactcggttt
61 cttggtaatt ttacgaaact tcgagagctc gctcgttagg ctgcgtactc gggagcaggc
121 gctcctcctc cctcgaaggg cgcctgactt cgcccagccc agaaccccgc cgtggccccg
181 agcttactag ggtgagcgcc acctccagca tgggcgtcag agccagcgtg ccgtggaaga
241 gcgggatgca gtccacgaag agagtgtggt tgcccgcgcc gggaggatgc tccttgcgcg
301 gcctctgcct ctctgccacc agaagcccgt tgacggcgca gtgcgggtac ttggcgccgt
361 gtagcaccat cttgcagtag gcctgggtgg tcagcttcac gccaggcatg ctgagcctag
421 ctgctcgcgt cgcgaccaac gcaccacagt acgaaacacg accccactgc acgctaagat
481 gagctcccac caccagctac agcctcccgc ctcagtccgc ccgccggaaa gcgtagtcgc
541 tagctagcgt ctgccagaaa gcagcgcggc ctgctcggcc tttcgcgaca gctgccgcac
601 cgcgatctga agctgatggg cgtgggcggg gcttcttcga ttcccgcgat gcttcgcggc
661 accgtcttgc tcttccggtg cgggacccgc tcttccggtc gcgagcaccc ggggtgtaga
721 gggcggtcgc ggcggtcgcc tgggcagcag tggcaggtga cggcctttga cagcgggtga
781 gggcggcgcg gccatgggcc gagatcctgg agcgccgggg ccggagcggt gcctccgagg
841 cgcccccgga ctcgggactt gagcagctcc gtgaccttgg ggcgcgttcc cgggcggatc
901 tgttgtcttg ggtccccatt tgccgttcgg ttccggcctg cccagcatcg ggcgttcccg
961 ctccgccagg cccgagggac agcgagctga gtcctgacgt cacgctacgg tttctgccgc
1021 cacgggcgtt gttttttgcg gtctcgggcg ttcgctctcg gggagccgaa atcaagaggg
1081 gttgtgttaa agtgaggcgt ggagctcggg tcgctggggc gggtgacagg gtcatccagg
1141 tcgcctgcgg gccgcaggga cgggaagcgc gccagggcta gggcttgggc ggcctcctcc
1201 gcttgtcctt cgcagtctct gcgcaagtcg atttttaaaa taaaatcaag tccgcagcgg
1261 tgctcccacc gcccacagag aggaacagct cgtggtggca ccgtgctata ccgagttcta
1321 gcagtttcag tcattctggc cttctagtta atctttaaaa agctgcgttt tctagtaagt
1381 ggccaaagcc atgtatgtat atcacagccc ttggtttgat atcaggaagc tctgtaaatg
1441 tgtactgagt agaagaacct tatcctgtgc tatttcatgc cttctcctca gtaataaaaa
1501 ctggcttctg ggtacacgcc tctggcctgc aatgccagct cttatgaggt agatatggta
1561 aggtcagcct gtgccttaaa aagctgatga aatcatacca aaaaaaattt ttttaacgtt
1621 gggggaataa gttgcgttta cttcctcaat gttctgtggc aaaaagactt gtgctaaaag
1681 gtgttttctc tcattgttag ggatatacgt tttttatctt tcagaatgtt ggctaccagg
1741 gcacttagcc taattggcaa gagagccatt tctacttcgg tgtgccttcg ggcacatggt
1801 aagtggggct tttacttcct ttccttttct gttttccttc tttggtttct catgacaggg
1861 tttctctggt agccctagct gccttggagc tcagagactt aacctgcctc tgcctctgct
1921 ttgcctcccg agttccctgg gattaaagat gtgcaccacc aggcctggct aaggactgtt
1981 actttcaaat aggccaactt aatgtcattt tgcccctaag tctaagatcc tgtgctagga
2041 ttttaacaaa gatgtctggt agcttgacct tgcggggatt ttagggagag atgagaattt
2101 gaacaggacg gttgtctgct tgaaggagca tagataaatc ctgttcgcca ggatcttggc
2161 ttgctttagt ttcctctcac agtttgtttt ctagttctct cttccgtccc tccttctgcc
2221 cttccttcca gtctcactgt gcagctctga ctggctttga actctcaggg ttcctgactc
2281 tgcctcctga atgctatggt taaaggtaca gtaccacacc ggtaaagttc tgtcccttct
2341 gtctgtctcc atatcttact ctaatctttt ccacccacaa aactctgacc ctcttaagcc
2401 ccccttctgt ttccatcctg gaagcagtgg aagcaaaggc cgttgggtgg gcttgagtca
2461 gagctgtgcg gattgcattg caatcatggc tagctcctgc tgttgtaagg atcggccttc
2521 tcagctgaaa tatacagaca tgcaaggttt ggttctgagc ctggcatgtc accacgttat
2581 cttggcactt gtgaagctgt tcttcctacc agtgttaggc actgagacta agataacgtg
2641 aggtggacct tccacagagc ttgcagtatg gagtgggctg gccacgggaa ggtagcgtta
2701 gccctagagg tggactgtgt agcctggctg gcacttggga aggcttctag gagaagggtt
2761 ctgctgccga aggctagcag tgtgaggcat gaggcttggg ttgtagatga gatgtttgga
2821 gaaccttgtt cagcatgtat tgagtatgca acagcggccc tccgtgttgg tgttagtcag
2881 gcatcctgca gtagttctaa tgctgtgtcc tgttgttctc ccccggggca ccaggtgcag
2941 gctgagacat taagtgttat tgaagggttt gggcaaggaa aatccctctt ttattaacca
3001 acatgaaaga caggctccat ctccgagcac gggaagctgt gacaagacca attttccagt
3061 ttggcttggc tgtcatttta ttaatctggc cagtggacaa ggagcttcaa tctccttgga
3121 catctgtgct tacagtatta gggcgctttg ggactccact ggggcactgc tgtcagttga
3181 ggtatttgtg gtgtgaggtg actgagaagc ggtctgagcc ctaacgtctg acaagccagg
3241 cagcgctcac cttgggtaag aacagaagtg atcttttgag tacagggagt ctttgccttt
3301 ctttgccctt ctattatttt gtaaatttcc tccaaagatt cagatttact aaggcatgca
3361 gggctactgc gaacccctga tgtgtaaagc ctggcatgtg cctgggtagg ttgggaaggt
3421 ttctacaacc caggtctact tggaagtaag gctgtgagct ctcctcaccc acagccttta
3481 gggctgagga gcaaggatgg ctgcttggga cttatcttca gtctcactca gcatggtccg
3541 caggggtcag tgtcctccat gtttcccatg ctccggggtg tgtatgtgtg atgccatcct
3601 tgcctagtga ggtcactcac tcgccacact tgggcacggt gggtcctggt cctgcacagg
3661 tggctgcggc tgactgtggg ctctgcctct ctgtcctttt aaaagaggag cgtttggcct
3721 ttgccttcct catcccaggg acaagcacaa agctctgaag tgtagaatac agtgttttat
3781 ggccgctgtg ctctgagacc atgagagttt atggcagtct gatagccaag ctgtaagtca
3841 cacaatacat tggctcactg aagtcacttc ttgttatttt tagtatactc actggcatgg
3901 taccattatc atcatagttg attgattctg gaacattctc accctaattt acatctttga
3961 atagcttgca atccaagttt tttaaaccta gaggaaagga ttgagggtgt gtgtgttcaa
4021 cttggtaaga aggttcagta gttgccattc tttttctgat cattatctcc taggtttttt
4081 tttttttttt tgttctttgt tttgttttct caagatttat ctattttatg tatgtgaata
4141 aactgtctca ccagtctcac tgacacaccg gaagagggca tcagattcca ttacagatgg
4201 ttgtgagcca ccatgtggtt gccgggattt gagctcagga cctctggaag ggcagtcagt
4261 gctcttaact gctgagccat ctctccagcc ctgtctccta gttttaagac aatgtctgtg
4321 attgatcagt caggtctcga gcttgagatc ctcctgcctc agcctgccaa gtgcttggat
4381 ttggtgtatg ctatcccgtc cagctttatg ggatgctaag agttaaagtg ggagcgtgat
4441 tctggctgtt ttggttcgga tctgttgaga tgagtttgaa cagaagaatg gagactctgg
4501 tccttcgtgg taccaaaagg aacacatgga aggaccacag cactgcttaa ggcttagtct
4561 attgtgtacc agcatgacct ggacattcag acatgggcct gaacttatgg ggcaaagcaa
4621 agctttgtcc tacagacagc tggggcaagt tagagacttt agcaacagga aaccctgggg
4681 gaacagtggc ctgagcgttg tcctgctgag tcctaagtga tgcgcatacg catgctcagt
4741 gccatggtgc tgaggagcag ccggacctcc ctcaggctgg ctctttcgct gcttactttg
4801 ggccgacgtg actggttttg agtgggaaac atccaaagga aagcagaact gatcagccgt
4861 gggtctgctt attctgcaac agccactttt acctttttgg gtgctatgtt ctgagtatga
4921 gagcctgcag ttggatcttc attcagtcta gttgcttgtc caacaagtaa ccctcaaccc
4981 tggtcctgcc tctggtgact aaatcctagg gtgtggttag gttaggggct ctcctttaac
5041 tgtgatcacc cttctgccta gactcccatc cacgagtttt caggtttatc catgtgtttt
5101 agggagtgtt gtgaagagtg aagactatgc tctcccatct tatgttgatc ggcgtgacta
5161 ccccttgcct gatgtggccc acgtcaagct gctgtctgcc agccagaagg ccctgaagga
5221 gaaggagaag gccgactgga gcagcctttc cagggatgag aaagtccaat gtgggtatca
5281 gagggtgtgc atgaaaactc agtagtgtgt ggagctgact aggtcaggtc tccggctggg
5341 cctctgggta tctctactcc acactgctgc cttagccctt agtgaggagc aggcgtggag
5401 attacagctt ttctgtacgc acgatggggg tggttttgcc aaaagatcag ctaaacatcg
5461 tgtgctgtga aagccgtgtg aagagtcaca ttcagaggcc tttgctcaca ctcagctctg
5521 cgttttctcc ctctgtgtgt gctggtgtgt gagcgcagat ctgtgcccag ttgtgtgttc
5581 tggcctagcc catgctgtcc ctgggatggg ttcttcaggg aggggactga gtcctcttta
5641 ccctgcatat gtcccgttca gtgtaccgca tccagtttaa cgagagcttc gctgagatga
5701 acaagggcac caatgagtgg aagacagtgg tgggcctggc catgttcttc atcggcttca
5761 ctgcgcttgt gctgatctgg gagaagagct acggtaagtg gggagggcga ggcgaggtga
5821 ggcctgggtc agctgtggct cttggtactg ttggggtctc acgtggcctc cagagacatt
5881 gtaatcacag ggacatttca gagctagagg gagccttttg cacggccaac tgtccttgtg
5941 gcagagtgag acgggtttgc tttgtgtagc ataccaagtt ctgtagccct ggatctgctt
6001 agctcagtcc ccatgtctac acgcggactg catagtgtga gctaggagac ccatttgctg
6061 catggctggc tgcatggctg gctgcatggc tggctgcatg gctggctgca tggctggctg
6121 catggctggc tgcatggctg gctgcatggc tggctgcatg gctggctgca tggctggctg
6181 catggctggc tgcatggctg gctgcatggc tggctgcatg gctggctgca tggctggctg
6241 actggtcctg agcatctgga gtctggggtg ttaaggcttt tttttccata ctgtttggac
6301 actgttgagc ttgcctgctc tctgacatgc atcctctttg ggtcaggctg tgtttgcatt
6361 cagagcaggc cctccttgtg agtgtggctg cagattccta acatgccagc cttctgagtg
6421 gctcccccta gctgtgtggt aggccgccct gcagactctg ccactgacgg cttaatactt
6481 aggactccct gcagaccttt cacaagtgag gaagggtctg agataggagt tactagagcc
6541 ctggattaaa gcttgtgaga gagaggggtt gagtgacttt gcttaagtct gggggcaacc
6601 tgagccatgg atgcttgggc tgcgtcatcc cagcggcagc cttcctcaca gagttgttct
6661 ctaccacagt gtatggcccc atccctcata cctttgatcg tgactgggtg gccatgcaga
6721 ccaagcggat gctggacatg aaggtcaacc ccattcaggg cttctccgcc aagtgggact
6781 acaacaagaa tgaatggaag aagtgagagc ctgctgctgt gggctcctcc ctccctccct
6841 ccctcagcat gctggaagct gctgtgtcca atggtccatg ttaataaatg accagtttac
6901 gtggtgcctg tgtggttcat tctttggcag tcattaagtg aaggtgcctg tctgctgaga
6961 tgctaggtct ctcatagtgg aagtgacgag gttttaaggt tttctagttg tagtattact
7021 gtgtatgatg tgtgtcagga agcatgtatg gagaacagaa cagcttggga gtgtgttcac
7081 cctccatttt gatgtggttt tgggagtcaa gttcaggtca ccaggccggg tgacacgcgt
//