GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS RATRNXX 16298 bp ds-DNA ORG 25-MAY-1991
DEFINITION Rat (R. norvegicus) mitochondrial genome
ACCESSION X14848
KEYWORDS 12S ribosomal RNA; 16S ribosomal RNA; ATPase; ATPase subunit 6;
ATPase subunit 8; NADH dehydrogenase; NADH dehydrogenase subunit 1;
NADH dehydrogenase subunit 2; NADH dehydrogenase subunit 3;
NADH dehydrogenase subunit 4; NADH dehydrogenase subunit 4L;
NADH dehydrogenase subunit 5; NADH dehydrogenase subunit 6;
complete genome; cytochrome b; cytochrome c oxidase;
cytochrome c oxidase subunit I; cytochrome c oxidase subunit II;
cytochrome c oxidase subunit III; origin of replication;
ribosomal RNA; transfer RNA; transfer RNA-Ala; transfer RNA-Arg;
transfer RNA-Asn; transfer RNA-Asp; transfer RNA-Cys;
transfer RNA-Gln; transfer RNA-Glu; transfer RNA-Gly;
transfer RNA-His; transfer RNA-Ile; transfer RNA-Leu;
transfer RNA-Lys; transfer RNA-Met; transfer RNA-Phe;
transfer RNA-Pro; transfer RNA-Ser; transfer RNA-Thr;
transfer RNA-Trp; transfer RNA-Tyr; transfer RNA-Val;
ubiquinol-cytochrome c reductase.
SOURCE Mitochondrion Rattus norvegicus DNA.
ORGANISM Mitochondrion Rattus norvegicus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (bases 1 to 16298)
AUTHORS Saccone,C.
JOURNAL Unpublished (1989)
STANDARD full automatic
REFERENCE 2 (bases 1 to 16298)
AUTHORS Gadaleta,G., Pepe,G., De,C.G., Quagliariello,C., Sbisa,E. and
Saccone,C.
TITLE The complete nucleotide sequence of the rattus norvegicus
mitochondrial genome: cryptic signals revealed by comparative
analysis between vertebrates.
JOURNAL J. Mol. Evol. 28, 497-516 (1989)
STANDARD full automatic
COMMENT SWISS-PROT; P00159; CYB$RAT. SWISS-PROT; P00406; COX2$RAT.
SWISS-PROT; P03926; NUO6$RAT. SWISS-PROT; P05503; COX1$RAT.
SWISS-PROT; P05504; ATP6$RAT. SWISS-PROT; P05505; COX3$RAT.
SWISS-PROT; P05506; NUO3$RAT. SWISS-PROT; P05507; NUOL$RAT.
SWISS-PROT; P05508; NUO4$RAT. SWISS-PROT; P11608; ATP8$RAT.
SWISS-PROT; P11661; NUO5$RAT. SWISS-PROT; P11662; NUO2$RAT.
*source: strain=wistar; clone=pSF2124. for seqs get included see
V00681, K00434, J01436, X07479, X07482
From EMBL entry MIRNXX; dated 28-DEC-1989.
FEATURES Location/Qualifiers
tRNA 1..67
/note="tRNA-Phe"
rRNA 69..1025
/note="12S rRNA"
tRNA 1026..1094
/note="tRNA-Val"
rRNA 1095..2653
/note="16S rRNA"
tRNA 2654..2728
/note="tRNA-Leu(uur)"
CDS 2729..3682
/note="NADH subunit 1"
/codon_start=2729
tRNA 3684..3752
/note="tRNA-Ile"
tRNA complement(3750..3820)
/note="tRNA-Gln"
tRNA 3824..3891
/note="tRNA-Met"
CDS 3892..4926
/note="NADH subunit 2"
/codon_start=3892
tRNA 4928..4993
/note="tRNA-Trp"
tRNA complement(4995..5063)
/note="tRNA-Ala"
tRNA complement(5066..5139)
/note="tRNA-Asn"
rep_origin 5140..5170
/note="origin of light strand replication"
tRNA complement(5171..5238)
/note="tRNA-Cys"
tRNA complement(5242..5307)
/note="tRNA-Tyr"
CDS 5309..6850
/note="cytochrome-c oxidase I"
/codon_start=5309
tRNA complement(6850..6919)
/note="tRNA-Ser(ucn)"
tRNA 6922..6989
/note="tRNA-Asp"
CDS 6991..7671
/note="cytochrome-c oxidase II"
/codon_start=6991
tRNA 7678..7741
/note="tRNA-Lys"
CDS 7743..7943
/note="ATPase subunit 8"
/codon_start=7743
CDS 7904..8581
/note="ATPase subunit 6"
/codon_start=7904
CDS 8584..9366
/note="cytochrome-c oxidase III"
/codon_start=8584
tRNA 9368..9435
/note="tRNA-Gly"
CDS 9436..9780
/note="NADH subunit 3"
/codon_start=9436
tRNA 9785..9852
/note="tRNA-ARG"
CDS 9855..10151
/note="NADH subunit 4L"
/codon_start=9855
CDS 10145..11521
/note="NADH subunit 4"
/codon_start=10145
tRNA 11523..11590
/note="tRNA-His"
tRNA 11591..11650
/note="tRNA-Ser(agn)"
tRNA 11650..11720
/note="tRNA-Leu(cur)"
CDS 11721..13565
/note="NADH subunit 5"
/codon_start=11721
CDS complement(13531..14046)
/note="NADH subunit 6"
/codon_start=14046
tRNA complement(14047..14115)
/note="tRNA-Glu"
CDS 14121..15236
/note="cytochrome b"
/codon_start=14121
tRNA 15265..15331
/note="tRNA-Thr"
tRNA complement(15333..15400)
/note="tRNA-Pro"
misc_feature 15401..16298
/note="D-loop containing region"
BASE COUNT 5556 a 4274 c 2030 g 4438 t
ORIGIN
1 gttaatgtag cttataataa agcaaagcac tgaaaatgct tagatggatt caaaaatccc
61 ataaacacaa aggtttggtc ctggccttat aattaattgg aggtaagatt acacatgcaa
121 acatccataa accggtgtaa aatcccttaa agatttgcct aaaacttaag gagagggcat
181 caagcacata atatagctca agacgccttg cctagccaca cccccacggg actcagcagt
241 gataaatatt aagcaatgaa cgaaagtttg actaagctag tacctctcag ggttggtaaa
301 tttcgtgcca gccaccgcgg tcatacgatt aacccaaact aattattttc ggcgtaaaac
361 gtgccaacta taaatctcat aatagaatta aaatccaact tatatgtgaa aattcattgt
421 taggacctaa gcccaataac gaaagtaatt ctaatcattt atataatgca cgatagctaa
481 gacccaaact gggattagat accccactat gcttagccct aaaccttaat aattaaacct
541 acaaaattat ttgccagaga actactagct acagcttaaa actcaaagga cttggcggta
601 ctttatatcc atctagagga gcctgttcta taatcgataa accccgttct accttacccc
661 ttctcgctaa ttcagcctat ataccgccat cttcagcaaa ccctaaaaag gcactaaagt
721 aagcacaaga acaaacataa aaacgttagg tcaaggtgta gccaatgaag cggaaagaaa
781 tgggctacat tttcttttcc cagagaacat tacgaaacct ttatgaaact aaaggacaaa
841 ggaggattta gtagtaaatt aagaatagag agcttaattg aatagagcaa tgaagtacgc
901 acacaccgcc cgtcaccctc ctcaaattag attgacattc acatatacat aatttcacta
961 acaaatttat gagaggagat aagtcgtaac aaggtaagca tactggaaag tgtgcttgga
1021 ataatcacag tgtagcttaa tcacaaagca tctggcctac acccagaaga attcataaaa
1081 aatgaacact ttgaactaac cctagcccta caaccaacca acataactaa acccccacat
1141 aaactaaaac atttaactca aaaagtattg gagaaagaaa tttacttacc aagagctata
1201 gagaaagtac cgcaagggaa atgatgaaag actaatttaa agtaaaaaca agacaaagat
1261 taaacctgta ccttttgcat aatgaattaa ctagaaaatc cttaacaaaa agaatttaag
1321 ctaagaaccc cgaaaccaaa cgagctacct aaaaacaatt tcatgaatca acccgtctat
1381 gtagcaaaat agtgggaaga tttttaggta gaggtgaaaa gcctatcgag cttggtgata
1441 gctggttgcc caaaaaagaa tttcagttca aactttaagc ttccatcaga acaacaaatc
1501 aaaatgtaaa cttaaaatat agccaaaaga gggacagctc tttaggaaac ggaaaaaacc
1561 ttaaatagtg aataaacaac tacaatcact taaccattgt aggcttaaaa gcaagccatc
1621 aataaagaaa gcgtcaagcc acatcatctt acacacacac taattccaca aacctcaaaa
1681 attccaaaat tacaaattgg gctaaatcta tgatcctagt gaatactgtt aatatgtgaa
1741 caagaaccaa tccaccaagc acaagtgcta agacaaccgg ataaccattg ttaattattg
1801 aatcataggc ataacccaac aatagaatta cctatcccta actcgttagc ccaacacagg
1861 cgtgctttaa ggaaagttta aaaaagtaaa ggaactcggc aaacacgaac cccgcctgtt
1921 taccaaaaac atctcctcta gcataacaag tattagtggc atcgcctgcc cagtgactaa
1981 agttccacgg ccgcggtatc ccgaccgtgc aaaggtagga taatcacttg ttccttaatt
2041 agggactaga atgaatggct aaacgagggt ccaaccgtct cttacttgca atcagtgaaa
2101 ttgaccttcc agtgaagggg cggactcata ataaaagacg agaagaccct atggagcttt
2161 aatttactaa tttcaattta tataaaaaaa cctaatgggc gaaaacaaca aaattatgaa
2221 ctaccaaatt tcggttgggg tgacctcgga gaataaaaaa tcctccgaat gattataacc
2281 gagtcggtaa ccgtgtccga cccagtcaag taatactaat atcttattga cccaattatt
2341 gatcaacgga ccaagttacc ctagggtaac agcgcgacct atttaagagt tcatatcgac
2401 aattagggtt tacgacctcg atgttggatc aggacatccc aatggtgcag aagctattaa
2461 tggttcgttt gttcaacgat taaagtccta cgtgatctaa gtccggcaat ccaggtcggt
2521 ttctatctat ttacaatttc tcccagttac gaaaggacaa gagaaatgga gaccaaccaa
2581 tcctaggctt ccaaccaatt tagaaaaact taataaagta tatatgtaca ataaataacc
2641 ttagacccaa gttattaggg tggcagagcc aagtaattgc gtaagactta aaaccttgtt
2701 cccagaggtt caaatcctct ccctaatagt gtactttatt aatatcctaa cactcctaat
2761 cccaatctta attgccatag gccttctcac cctagtagaa cggaaaatcc taggctacat
2821 acaattacgc aaaggcccca acaacgaagg cccatatggt aaactacaac catttgcaga
2881 tgccataaaa ctattcataa aagaacccat acgccctcta accacctcaa tatcactatt
2941 tattatcgcc ccaaccctct cccttacact agctctaagc ctatgaattc ccttaccaat
3001 accccacccc cttatcaacc tcaacctagg cataccattt attctagcca catccagcct
3061 ttcggtctac tccattctat gatcgggatg agcctcaaat tcaaaatact ccctattcgg
3121 agccctacga gccgttgccc aaaccatctc ttacgaagtc acaatagcct tatacctctt
3181 atccgtcctc ctaataagcg gctccttctc cctacaaata cttatcacta cacaagaaca
3241 tatctgacta ttaatccccg cctgaccaat agccataata tgatacattt caaccctcgc
3301 agaaacaaat cgagctccct tcgacttaac agaaggagaa tcagaattag tctcaggctt
3361 taacgtcgaa tacgccgcag gaccattcgc cctattcttc atagccgagt acaccaacat
3421 tattctaata aacgccctaa catcaattgt attcctaggc cccttatatc atatcaatta
3481 ccctgaatta tactcaacca gcttcataac agaaacacta cttctatcca caactttcct
3541 atggattcga gcatcctacc cccgttttcg atatgaccaa ctaatgcacc tcctatgaaa
3601 aaatttcctc ccactaacac tagcattctg catatgatac atttccctgc caattttcct
3661 agcaggaatt ccaccctaca catagaaata tgtctgacaa aagagttact ttgatagagt
3721 aaataataga ggtttaaatc ctcttatttc taggacaata ggaattgaac ctacacctaa
3781 gaattcaaaa ttctccgtgc caccaataca ccctatccta catagtaagg tcagctaact
3841 aagctatcgg gcccataccc cgaaaatgtt ggttaaaccc ttcccgtact aataaatcca
3901 attaccctaa ccattattta cttaaccacc tttaaaggcc gcctaatcac gacacttagc
3961 accaacttac caccaatatg agtaggattg gaaataagcc ttttagctat catcccactt
4021 ctagccaaca aaaaaagccc acgatcaact gaagcagcaa caaaatattt tctaacccaa
4081 gctacagcct caataattat cctactagtc atcatcctca actacaaaca atcaggaata
4141 tgaacccttc aacaacaaac caataacata ctactcaaca taatactcat ttcactggcc
4201 ataaaacttg gactagcccc attccactac tgactacccg aagtcaccca aggaattccc
4261 ctacacattg gattaatctt actaacatga caaaaaattg ctccactatc aattctatac
4321 caattttatc aactcctaaa cccaactatc accaccattc tcgcaatttc atcagctttc
4381 gttggcgcat gaggaggact taaccagacg caaacacgaa aaaccatagc gtacccatca
4441 attgcccaca taggaggaat aacggcaatc cttccataca accctaccct taccctccta
4501 aacttaacaa ttaacatcct acttaaggcc ccaatattca ttacactcat aacaaatccg
4561 gcaacaacaa tcaacacact ctcacccata tgaaataaaa ctcccataat cctaaccata
4621 gcatccatca tcctcctatc actaggagga ctcccccctc tcacaggatt tttaccaaaa
4681 tgagcaatta tctccgagct tctaaaaaac aactgctcaa ccctatcaac actaatagct
4741 atcatagccc tattaagcct attcttctat actcgactaa tttattccat atccctcacc
4801 acattcccaa ccaacaacaa ctccaaaata atctcccacc accaaaaccc aaaacataat
4861 tttatcctcc caaccctcac agtattaagt accctaaccc taccgctttc ctcccaacta
4921 atcacataga agtttaggat atacagttca agagccttca aagcccttag aaaacaaaca
4981 agtttaactt ctgataagga ctgtaagact atatcttaca tctgttaaat gcaaatcaac
5041 tgctttaatt aagctaaatc ctcaactaga ttggaaggaa tcaaattcct acgaaaattt
5101 agttaacagc taaataccct acttactggc ttcaatctac ttctcccgcc tatcagaaaa
5161 gaggcgggag aagccttagt agaggagatt ctctacacct tcgaacttgc aattcgacat
5221 gataatcacc ttaaggcttt ttggtaaaaa gggggctcaa cccctgtctt tagatttaca
5281 gtctaatgct tactcagcca ttttacctat gttcgtaaac cgttgactct tttcaactaa
5341 ccacaaagat atcggaaccc tctacctatt atttggagcc tgagcaggaa tagtagggac
5401 agctttgagt attctaattc gagctgaact aggacagcca ggcgcactcc taggagatga
5461 ccaaatctat aatgtcatcg tcacagccca tgcattcgta ataattttct ttatagtaat
5521 acctataata attggaggct tcggaaactg acttgtacca ctaataattg gagcccctga
5581 tatagcattc ccacgaataa ataacataag cttttgactg cttcctccat catttctact
5641 ccttttagca tcctccatag tagaagctgg agctggaaca ggatgaacag tatatccccc
5701 cttagccgga aacctagccc atgctggggt atccgtagat ttaactattt tttccctcca
5761 cctagccggg gtgtcttcta tcttaggagc tatcaacttt atcaccacta tcattaatat
5821 aaaaccccct gctataaccc aatatcagac acctctcttt gtatgatccg tactaattac
5881 agccgtccta ctacttctct cactgccagt attagcagca ggtatcacta tactccttac
5941 agaccgaaat ctaaatacta ctttcttcga ccccgctgga ggtggagacc caattcttta
6001 tcaacaccta ttctgattct tcggccaccc agaagtgtac atcttaattc ttccagggtt
6061 tggaattatt tcacatgtag ttacctatta ctctggaaaa aaagaaccct tcggatatat
6121 aggtatggta tgaaccataa tatctattgg cttcctagga tttattgtat gagcacatca
6181 catattcaca gtaggcctag atgtagacac ccgagcctac tttacatctg ccactataat
6241 tatcgcaatt cctacaggcg taaaagtatt cagctgactc gctacactac atggaggaaa
6301 tatcaaatga tcccccgcca tattatgagc cttagggttt atcttcttat tcacagtagg
6361 gggcctaaca gggatcgtac tatctaactc atcccttgac attgtacttc atgatacata
6421 ctacgtagta gctcacttcc actatgtctt atctatagga gcagtattcg ccatcatagc
6481 tggcttcgtc cactgattcc cactattctc aggctatacc ctaaatgaca catgagcaaa
6541 agcccacttt gccattatat ttgtaggtgt aaacataaca ttttttcctc aacacttcct
6601 aggattagca gggatacctc gtcgttactc tgattatcca gatgcttata ccacatgaaa
6661 tacagtctcc tctataggct cattcatctc acttacggcc gtccttgtaa tgatcttcat
6721 gatttgagaa gccttcgcat caaaacgaga agtgctctca atttcctact cttcaactaa
6781 cctagaatga ctgcatggat gccccccacc ttaccacaca ttcgaagaac cttcctatgt
6841 aaaagttaaa taagaaagga aggaatcgac cccctacaac tggtttcaag ccaatttcat
6901 aaccattatg tctttctcaa tgagatatta gtaaaataat tacataacct tgtcaaggtt
6961 aagttataga cctaatccta tatatcttac atggcttacc catttcaact tggcttacaa
7021 gacgctacat cacctatcat agaagaactt acaaactttc atgaccacac cctaataatt
7081 gtattcctca tcagctccct agtactttat attatttcac taatactaac aacaaaacta
7141 acacacacaa gcacaataga cgcccaagaa gtagaaacaa tttgaacaat tctcccagct
7201 gtcattctta ttctaattgc ccttccctcc ctacgaattc tatacataat agacgagatt
7261 aataacccag ttctaacagt aaaaactata ggacaccaat gatactgaag ctatgaatat
7321 actgactatg aagacctatg ctttgactcc tacataatcc caaccaatga cctaaaacca
7381 ggtgaacttc gtctattaga agttgataat cgggtagtct taccaataga acttccaatt
7441 cgtatactaa tctcatccga agacgtcctg cactcatgag ccatcccttc actagggtta
7501 aaaaccgacg caatccccgg ccgcctaaac caagctacag tcacatcaaa ccgaccaggt
7561 ctattctatg gccaatgctc tgaaatttgc ggctcaaatc acagcttcat acccattgta
7621 ctagaaatag tgcctctaaa atatttcgaa aactgatcag cttctataat ttaaactcat
7681 tgcgaagctt agagcgttaa ccttttaagt taaagttaga gacaacaaat ctccacaatg
7741 acatgccaca actagacaca tccacatgat ttattacaat catctcctca atagccacac
7801 tatttatttt atttcaatta aaaatttctt cccaaacctt tcctgcacct ccctcaccca
7861 aaactatagc cacagaaaaa acgaataacc cttgagaatc aaaatgaacg aaaatctatt
7921 tgcctctttc attaccccca caataatagg tctaccaatt gttgtgacca ttattatgtt
7981 cccatcaatt ctattcccat catcagaacg cctaatcagc aaccgactac actcatttca
8041 acactgacta atcaaactta tcatcaaaca aataatgtta attcacacac caaaaggacg
8101 aacctgagcc ctaataattg tatccctaat tatatttatt ggctcaacca accttctagg
8161 gcttcttccc catacattta cccctaccac tcagctatct atagacctaa gcatagccat
8221 ccccctatga gcaggagccg taattctagg tttccgacac aaactaaaaa attctttagc
8281 ccacttctca ccgcaaggaa cccccatctc actaattccc atactaatca tcatcgaaac
8341 tatcagccta tttattcaac cgatagcact agcagtacga ctaacagcaa acattacagc
8401 aggccatcta ttaatgcatc taatcggagg agctacccta gtacttatag acatcagccc
8461 accaaccgct acaattacat ttattattct acttctactt acagtacttg aatttgccgt
8521 agccttaatt caagcctatg tattcaccct tctagtcagc ctgtacctac atgataacac
8581 ataatgaccc accaaaccca tgcataccat atagtaaacc caagcccatg accactaaca
8641 ggagccctat cagctcttct actcacatcc ggcttagtaa tatgattcca ttacaactcc
8701 acaattctcc tatcattagg cctcctgaca aacatcctaa ctatatatca atgatgacga
8761 gatatcatcc gtgaaggaac ataccaaggc caccacaccc ctattgtaca aaaaggcctc
8821 cgatacggaa taatcctgtt tattgtctcc gaagtattct tctttgccgg atttttctga
8881 gcattttatc attccagcct agttcctacc cacgacctag gcggttgctg acccccaaca
8941 ggaatcaccc ctttaaatcc cctagaagta ccccttctaa atacatcagt cctcttagca
9001 tcaggagtct caattacatg agcccatcac agcctaatag aaggcaaccg aaaccatata
9061 aaccaagccc tactaatcac cattctctta ggattatatt tcactatctt acaagcctca
9121 gagtatttcg aaacatcatt ttctatctca gacggaattt acggctcaac attcttcata
9181 gcaacgggat ttcatggcct ccacgtaatt attggctcaa ctttcctaat tgtctgtcta
9241 ctacgacaac taaaattcca cttcacatca aaacatcatt tcggatttga agccgcagca
9301 tgatactgac acttcgtaga tgtagtttga ctattcctat acgtttctat ctattgatga
9361 ggatcctact cccttagtat aaacaataca actgacttcc aatcagttaa ttctgaaaaa
9421 actcagaaga gagtaattaa cctacccatt atcatcacaa ttaacatcac cttatccttt
9481 atcctcattt caattgcatt ctgattgcct caaataaact tatactccga aaaagcaaac
9541 ccatatgaat gtggcttcga cccaacaagt tctgcacgcc ttcctttttc aataaaattt
9601 ttcttagtag ccattacatt tctactattc gacctagaaa tcgccttact acttcccctc
9661 ccatgagcga ttcaaacaac caataccact acaataatag caactgcctt tattttagtc
9721 actattttgt ctcttggcct agcctacgaa tgaacacaaa aaggactaga atgaacagaa
9781 taattggtaa ttagtttaaa taaaattaat gatttcgact cattagatta tgataataat
9841 cataattacc aacaatgaca tctgctttcc taaatttaac tatagccttt acattatctc
9901 tactaggtac ttttatattt cgctcccacc taatatccac tctcctctgc ctagaaggaa
9961 taatactatc actatttgtc ataacttcaa catccacatt aaactccaac tccataatct
10021 ccataaccat cccaattacc attctagttt ttgcagcctg cgaagcagca gtaggtttag
10081 ccttactagt aaaaatttca aatacttacg gaacagacta cgtacaaaac ctcaaccttc
10141 tacaatgtta aaaattattt tcccatctat catactcctc ccactaacat gactctcagc
10201 caacaaaaaa atctgaacca atgtcacctc ctacagcttt ctagtgagcc tattaagctt
10261 atcactccta tgacaaaatg acgaaaatta cctaaatttc tcagttatat tctcctccga
10321 tccattatcc accccactaa tcattctaac aacttgactc ctcccactaa taatgctcgc
10381 tagccaaaat cacataaaaa aagaaaatat aatgcatcaa aaactttaca tctcaatact
10441 tattagcctc caaattttac tcatcataac attctccgca acagaactaa ttttatttta
10501 tatcctgttc gaggccactc taatcccaac actaattatc attacacgat gaggcaacca
10561 aacagaacgc ttaaatgcag gaatttattt cctgttttat acactaattg gctccatccc
10621 actcttaatt gccctcattt caatccaaaa ctcaatagga acactcaact tcctaatcct
10681 ttccctcaca acacaccccc taccctcaac atgatccaac accattctat gactagcatg
10741 tataatagca tttataatca aaataccatt atacggagtc catctatgat taccaaaagc
10801 ccacgtagaa gctccaattg caggctctat aattttagca gcaattctcc taaagctagg
10861 gggttatggg ataatacgag tttccatcat tctagacccc ctaacaaaat ctttagccta
10921 cccattcatc atcctctcat tatgaggcat aattataact agctcaatct gcctacgcca
10981 aacagatcta aaatcattaa ttgcttactc atcagtaagc catatagccc tagtcatcac
11041 agccattata atccagacac catgaagctt catgggagcc acaatactaa taatcgccca
11101 cggcttaacc tcatcactct tattctgcct agcaaacacc aactacgaac gaattcacag
11161 ccgaactata attatagctc gaggattaca aataatcttt ccattgatag caacatgatg
11221 actattagca agcttagcca acctagcact accaccccta attaacctca taggcgagtt
11281 attcattgtt atagcaacat tttcctgatc gaacccctct atcatcctta tagcaactaa
11341 cattgtcatc acaggaatat actcaatata tatgattatc acaacccaac gaggaaaact
11401 aaccagccac ataaacaacc tccaaccttc ccacacacga gaattaacac tcatagctct
11461 acacattatt cccctcatac tattaacaat caaccctaaa ctcatcacag gcctaacaat
11521 atgtagatat agtttacaaa aaacattaga ctgtgaatct aacaacagga aatcaaattc
11581 cttatttacc aagaaagtat gcaagaactg ctaattcatg cacccatacc taaaacatat
11641 ggctttctta cttttatagg atagaagtaa tccattggtc ttaggaacca aaaaccttgg
11701 tgcaactcca aataaaagta ataaatataa taacaatcct aatcctcata attcttgatt
11761 tacttacaac accaatcaca ttttcaataa caatcttaac caaacttatg tacttccgtc
11821 atatgctcat tacatcaatt aaattctcat tcctccttag cctcttacct ttactactat
11881 tcttccacca caacacagaa tacataatta ctaactgaca ttgactaact attaattcta
11941 ttaaacttac tataagtttc aaaattgact atttctcaat cctattccta tcagtatccc
12001 tattcgtaac atgatcaatt atacaattct cttcatgata tatacactct gacccccaca
12061 ttaaccgatt cattaagtac ttaataatat tcctgaataa catactaatc ctaacctcag
12121 ctaacaatct attccaactc tttattggat gagaaggggt aggaattata tccttcttat
12181 taatcggatg atgatatggc cttgcagacg ccaacacagc ggccctccaa gcaatcctct
12241 acaaccgagt cggagacatt ggtttcatcc tagctataac ctgattctgc ctaaacataa
12301 actcctgaga actccaacaa attttcttaa ccaacaccaa caacaatcta gtccctctca
12361 caggactact aattgcagcc acaggaaaat ccgcccaatt cggacttcat ccatgactcc
12421 catcagctat agaaggccca actcccgtct ctgccctact acactcaagc acaatagttg
12481 tagcagggat cttcctaata atccgattcc accccctaac ctcaaacaat agtactatta
12541 taacagccat actatgtctt ggtgcaatca ccacattatt cacagcaatc tgtgctctca
12601 cccaaaacga catcaaaaaa atcgtagctt tctcaacatc cagccaacta ggccttataa
12661 tagtcacatt agggattaac caaccctacc ttgctttcct ccacatttgc acccatgcat
12721 tcttcaaagc catattattc atatgctccg gatcaatcat ccatatcctc aacgatgaac
12781 aagacattcg aaaaataggc aatataataa aagcaatacc attcacatca tcttgtctca
12841 ttatcggaag cctagccctt accggaatac ctttcctcac aggattctat tcaaaagatc
12901 tcatcatcga agccatcaac acgtgtaaca ccaacgcctg agccctaata atcactttaa
12961 tcgccacatc cataactgct gtgtacagca tacgactcat ctacttcgta acaatgacaa
13021 aaccacgata ctccccacta attactatta atgaaaacaa cccaaacctc attaatccaa
13081 tcaaacgcct agcattagga agcatcctag caggcttcct tatctcacta aatattcctc
13141 caactaacat tcaattcctc acaatacctg acaatttaaa aataacaagc ctaattaatt
13201 acaatctagg atttgcaatt gccctagaat taaacaattt aaccactaaa tctatcaata
13261 aagcaaaccc acaatcatca ttctcaactc cactaggtta ttacccacca attatacacc
13321 gaattattcc aataaaaact ataaatctac gtacaaatta ttccttaaac ctactagatc
13381 taatctgatt agaaaagaca atcccaaaat caacctcaat cacccaaacc caactatcta
13441 aaataatatc caaccaaaaa ggactaatca aactatattt cctatcattt ctcatcacta
13501 tttcactaat ttttatctta cacacactta atcccgagtg atttcaataa taataaaaat
13561 ccccgcaaat aaagaccacc cagccaccac tatcattcaa gtagcacaac tataaatagc
13621 cgcaacccca atccccccct ccaacataac cccaacatca tcaatctcat acattaatca
13681 atcgcctaga ctatcaaaat caactaactc caccttatta ttcaaactaa acaagtagaa
13741 cactaccaac tccataaaaa gccctaaaac aaaaaaacta aaaataaacc aattagaccc
13801 gtaagtggcc ggatattcct cagtagccat agcagttgta tacccaaata caaccaacat
13861 cccacccaaa taaattaaaa atactattaa acctaaaaac gaacccccaa accctaaaac
13921 tattaagcac ccaatacatc cactaacaat caatccaaac ccaccataaa taggtgaagg
13981 cttcaacgcc aaccctagac aaccagtcaa aaacagtaaa cttaaaataa acatataatt
14041 tgtcattatt tctacacagc atttaactgt gactaatgac atgaaaaatc atcgttgtaa
14101 ttcaactata gaaacatcta atgacaaaca tccgaaaatc tcacccccta ttcaaaatca
14161 tcaaccactc ctttatcgac ctaccggccc catctaacat ctcatcatga tgaaacttcg
14221 gttctctact aggagtatgc ctcatagtac aaatcctcac aggcttattc ctagcaatac
14281 actacacgtc tgataccata acagcattct catcagtcac ccacatctgc cgagacgtaa
14341 actacggctg actaatccga tacctacaag ccaacggcgc ctcaatattt ttcatctgcc
14401 tattcctcca tgtgggacga ggactatact atggatccta cactttccta gaaacctgaa
14461 acattgggat catcctacta tttgcagtca tagcaactgc attcatgggc tatgtactcc
14521 catgaggaca aatatcattc tgaggagcta cagtaattac aaacctatta tcagctatcc
14581 cttacattgg gactacccta gtcgaatgaa tctgaggagg cttctcagta gacaaagcaa
14641 ccctaacacg cttcttcgca ttccacttca tcctcccatt cattatcgcc gcccttgcaa
14701 ttgtacatct tcttttcctc cacgaaacag gatcaaataa ccccacagga ttaaactccg
14761 acgcagacaa aatcccattc catccatatt atacaattaa agacctccta ggtgtattta
14821 tattactatt attcctaata accctagtac tattcttccc agacctacta ggagacccag
14881 acaattatac acccgctaac cccctcaaca ccccacccca catcaaacca gaatgatact
14941 ttctctttgc ctacgctatt ctacgctcca ttcccaacaa actaggaggg gtcgtagccc
15001 taatcttatc aatcctaatc ttagccttcc taccattcct gcatacctca aaacaacgca
15061 gcttaacatt ccgcccaatc acccaaatcc tttactgaat cctagtagcc aacctcctag
15121 tcttaacatg aatcggaggc caaccagtag aacacccatt tatcattatt ggtcaactag
15181 cctccatcag ttatttttca attatcctca ttctcatacc aatctctgga attgttgaag
15241 acaaaatgtt aaaatgaaat taatgtcccg atagtataaa aattactctg gtcttgtaaa
15301 ccaaaaatga agagtcagtc ttctcaggac aatcaagaag aaggaactac ctccccacca
15361 tcaacaccca aagctgatat tctacttaaa ctacttcttg tcagtacata aaatgatatg
15421 gacattaaaa catttatgta tatcgtacat taaattattt tccccaagca tataagcatg
15481 taatatatat ctaatgattt aggacataca tttaaactca actataaatt cacaacaaca
15541 tgtctattct caaatacatt aagataatgc ttattagaca tatctgtgtt attagacatg
15601 caccattaag tcataaacct ttctcttcca tatgactatc cctgtcccca attggtctct
15661 atttctacca tcctccgtga aatcaacaac ccgcccactc gtccccctct tctcgctccg
15721 ggcccattcg tcctgggggt gactatactg aaactttaca ggcatctggt tcttacttca
15781 ggggccatca attggttcat cgtccatacg ttccccttaa ataagacaat ctcgatggta
15841 acgggtctaa tcagacccat gatcaacata actgtggtga tacacattgg tattttttaa
15901 ttttcggatg ccttcctcaa catagccgtc aaggcatgaa ggtcagcaca aagtcctgtg
15961 gaacctttta gttaagggtc atttatcctc atagacaaag ctcgaaagac tattttattc
16021 atgtttgtaa gacataaata tttataaata ctgaaaactc tgtcaacaaa cccccccacc
16081 ccctacacct gaaacttcaa tgccaaaccc caaaaacatt aaagcaagaa ttaaataaaa
16141 caaaaagcta cttaattctt aaaaggcttc tccattctag tagaccacaa aattttaact
16201 taaatcttag cattggtaaa atttcccgac acaaaatctt tcctcctaac taaaccctct
16261 ttacttgcct accctcagaa aattccacat acaccaaa
//GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS RATU2RNA 187 bp ss-mRNA ROD 28-MAY-1991
DEFINITION Rat (Novikoff hepatoma) U2 small nuclear RNA
ACCESSION X04212
KEYWORDS U2 small nuclear RNA; small nuclear RNA.
SOURCE Rattus norvegicus RNA.
ORGANISM Rattus norvegicus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Mammalia;
Theria; Eutheria; Rodentia; Myomorpha; Muridae; Murinae.
REFERENCE 1 (bases 1 to 187)
AUTHORS Reddy,R., Henning,D., Epstein,P. and Busch,H.
TITLE Primary and secondary structure of U2 snRNA
JOURNAL Nucleic Acids Res. 9, 5645-5658 (1981)
STANDARD full automatic
COMMENT From EMBL entry RNU2RNA; dated 24-APR-1990.
FEATURES Location/Qualifiers
misc_feature 1..187
/note="U2 small nuclear RNA"
misc_feature 1..1
/note="2'-0-methyladenosine"
modified_base 2..2
/mod_base=um
/note="2'-O-methyluridine"
modified_base 6..6
/mod_base=p
/note="pseudouridine"
modified_base 7..7
/mod_base=p
/note="pseudouridine"
modified_base 11..11
/mod_base=gm
/note="2'-O-methylguanosine"
modified_base 12..12
/mod_base=gm
/note="2'-O-methylguanosine"
modified_base 15..15
/mod_base=p
/note="pseudouridine"
modified_base 19..19
/mod_base=gm
/note="2'-O-methylguanosine"
modified_base 25..25
/mod_base=gm
/note="2'-O-methylguanosine"
misc_feature 30..30
/note="2'-O-methyladenosine"
modified_base 34..34
/mod_base=p
/note="pseudouridine"
modified_base 37..37
/mod_base=p
/note="pseudouridine"
modified_base 39..39
/mod_base=p
/note="pseudouridine"
modified_base 41..41
/mod_base=p
/note="pseudouridine"
modified_base 43..43
/mod_base=p
/note="pseudouridine"
modified_base 44..44
/mod_base=p
/note="pseudouridine"
modified_base 47..47
/mod_base=p
/note="pseudouridine"
modified_base 54..54
/mod_base=p
/note="pseudouridine"
modified_base 58..58
/mod_base=p
/note="pseudouridine"
modified_base 61..61
/mod_base=other
/note="2'O-methylcytidine"
modified_base 91..91
/mod_base=p
/note="pseudouridine"
BASE COUNT 45 a 43 c 41 g 58 t
ORIGIN
1 atcgcttctc ggccttttgg ctaagatcaa gtgtagtatc tgttcttatc agtttaatat
61 ctgatacgtc ctctatccga ggacaatata ttaaatggat ttttggaact aggagttgga
121 ataggagctt gctccgtcca ctccacgcat cgacctggta ttgcagtacc tccaggaacg
181 gtgcacc
//