GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS BRVBVPEPL 4837 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Berne virus mRNA for peplomer protein
ACCESSION X52506
KEYWORDS membrane protein; peplomer protein.
SOURCE Berne virus RNA.
ORGANISM Berne virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Toroviridae.
REFERENCE 1 (bases 1 to 4837)
AUTHORS Snijder,E.J.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 4837)
AUTHORS Snijder,E.J., Den,B.J.A., Spaan,W.J., Weiss,M. and Horzinek,M.C.
TITLE Primary structure and post-translational processing of the Berne
virus peplomer protein
JOURNAL Virology 178, 355-363 (1990)
STANDARD full automatic
COMMENT *source: cell line=virus-infected embryonic mule skin cells;
*source: strain=isolate P138/72;
From EMBL entry TOBVPEPL; dated 14-NOV-1990.
FEATURES Location/Qualifiers
promoter 9..16
/note="put. core promoter"
CDS 61..4803
/note="precursor polypeptide (AA -19 to 1562)"
/codon_start=61
CDS 61..117
/note="signal peptide (AA -19 to -1)"
/codon_start=61
CDS 118..4803
/note="peplomer protein (AA 1 to 1562)"
/codon_start=118
BASE COUNT 1364 a 840 c 885 g 1748 t
ORIGIN
1 ttttaaagtg tttagtacta gttttagtta taagtatagt ggtgttaagt ttgtgcaaaa
61 atgtttttat gtttctgtgc cgcgacagtt ttgtgcttct ggattaattc aggaggtgcc
121 gatgttgtgc caaatggaac attaattttt agtgagccag taccttatcc tttttcacta
181 gatgttcttc gttcgttttc acagcatgtt gttttaagaa ataaaagagc tgtaactact
241 atctcttggt cgtattccta ccaaattacc acctcatcat taagtgtaaa tagttggtat
301 gttactttta ctgcaccctt agggtggaac tattacactg gacagtcttt tggtactgtg
361 ttaaatcaaa atgcaatgat gagagcctct cagagtacct ttacatatga tgtaatatct
421 tatgtaggtc aacgtcctaa tttagattgt caagtaaaca gtcttgttaa tggtgggttg
481 gatggttggt acagcactgt tagagttgat aattgtttta atgcaccttg tcatgttgga
541 ggaagacctg gctgttcaat aggactacct tacatgagca atggagtatg tacaagagtt
601 ttatcaacaa ctcagtcacc agggttgcag tatgaaattt attctggtca acaatttgca
661 gtttatcaaa ttacaccata tacacaatat acaattacaa tgccatctgg aattttaggt
721 tattgtcaac aaaccccatt gtatgttgat tgtggtactt ggacaccatt tagggtacat
781 tcttatggtt gtgataaagt tactcagaat tgtaaatata cattaacatc taattgggtt
841 gttgcgtttc agaataaggc tactgctgtt attttaccat ctgagctaat tgtgcctgta
901 gcacaaaagg tgactcggag gttaggtgtt aatacaccag attatttttg gttggtaaaa
961 caggcttacc attatttgtc acaagcaaat ttgtcaccta attatgcatt gttttctgca
1021 ctctgtaatt cactttatca acaatcagca acattgtcaa ctttatgttt tgggtcacca
1081 ttttttgttg ctcaagagtg ctacaacaat gcattgtatc tgcctgatgc tgtgtttact
1141 actttatttt caacactttt ttcttgggac tatcaaatta attatccatt gaaccaagtg
1201 ttaacacaaa atgagacatt tttacaatta ccagccacaa attatcaagg acaaaccctt
1261 tcgcagggta ggatgttgaa tttgtttaaa gatgcaatag tttttttgga tttttttgat
1321 accaagtttt accggactaa tgatgctcca agttctgata tttttgttgt tgtggctcgc
1381 caagcacagt tgattcgtta tggtaatttt agaattgaac aaataaatgg ctattttcag
1441 gttaagtgtt catcaaatat tatttcaaca cttgaacctc atccagctgg tgtgataatg
1501 atagccaggc atcattcaat gtggtccgtt gcagcacgta attctacatc cttttattgt
1561 gttacacact ctttaacaac ttttggtaaa ttggatattt ctacttcatg gttttttcat
1621 actttagcct taccaagtgg cccggtatcc caagtgtcta tgcctttact ttcaactgct
1681 gctgttggtg tgtatatgca tccaatgatt gagcattgga tccccctttt aaccttggca
1741 caaagtcaat atcagcctag tttttttaat attggtataa ataagaccat tacccttact
1801 acccagttgc aggcatatgc tcaagtttat acagcttggt ttttgtctgt aatttatgtt
1861 agacttcctg aagcaaggag gttaactttg ggtgttcagt tagtaccatt tattcaagct
1921 cttttgtcaa ttaagcaggc tgatttagat gcaactgatg ttgattctgt agcaagatat
1981 aatgtgcttt ccctaatgtg gggtagaaag tatgctgttg tgaattataa tcaattgcct
2041 gagtggactt acccgttatt taagggtgag attggtgagt ctatgtggtt tagaaagaaa
2101 attatgccaa caactgaagg gtgtcaaacc agtgcccatt tttcatctat tacaggctat
2161 ttacagtttt ctgattatgt ttatatccct aagtataata aggtgtcatg cccaatatca
2221 actttggcac catcagtttt acaagtttat gaagtgcaat ccttgtttgt aattctaata
2281 caatgtgttt caggctctta tgattggtac ccagggttat ctggtggaac cgcttttgtg
2341 tataagtcat ataagttggg tacagtttgt gttcttttac catctgatgt tctttcaaca
2401 ggtccaaata taggatttta ttctggaaca gccttgtcga ttgtcaccgt acaaactaca
2461 aatgatgttt tacctaactg tattggcctt gttcaggata atatatttac accatgtcat
2521 ccaagtggct gtccagttcg taattcttat gataattata ttgtgtgttt tgacagttca
2581 acttatacgt ttaagaatta tcataggaca acaccacctg ttatgaatgt accaattcag
2641 gaagtaccgt tacaaatgga aataccaaca gtaattttac agtcttatga gttaaaacat
2701 actgaatctg tgcttttaca ggacattgag ggtggaatta ttgtagacca taatactggt
2761 tccatttggt atccagatgg acaagcctat gatgtttcat tttatgtttc agttattata
2821 cgttatgcac ccccaaaact tgagttacca tctactcttg caaattttac atcatgtctt
2881 gattatattt gttttggaaa ttatcagtgt cgaactgaag cacagacatt ttgcacttct
2941 atggattatt ttgagcaagt ttttaataag agtcttatat ctttaaaaac agcattgcag
3001 gatttgcact atgttcttaa gcttgtattg ccagaaacaa cattagaatt gactgaatta
3061 acacgtcgta gaagacgagc tgtttatgag tttgatgata ctatatccct actttctgaa
3121 tcttttgaga gatttatgtc accagcttca caagcctata tggcaaatat gttgtggtgg
3181 gatgatgcgt ttgatggatt tagtttgcca cagagaactg gctcaatcct ttcacgttca
3241 ccgtccctgt cctctgtttc atcttggaat tcctatacat ctcggacacc actcatttca
3301 aatgttaaaa cacctaagac gacttttaat gtgaagctat ctatgcctaa gttaccaaaa
3361 gcatctactc tttcaaagat cgggtctgtg ttatcgtcgg gcttgtcaat tgcttctctt
3421 ggtctttcaa tattttctat tgttgaagat cgacgtgtaa ctgagttaac acaacaacaa
3481 ataatggctc ttgaagatca gattactatt ttgactgatt atacagagaa aaattttaaa
3541 gagattcagt catcattgaa cactttggga caacaagttc aggatttttc acaacaagtg
3601 actatgtcac tacagcaact ttctaatggt cttgagcaga ttactcaaca gttggataag
3661 agtatttatt atgttacagc tacacagcag tatgccacct atatgtcatc tttaataaat
3721 catcttaccg agctggctgc tgctgtgtat aagacgcaag atatgtatgt gacatgcata
3781 cattcgctac aatcaggcgt cctctcaccc aactgtataa caccatctca gatttttcag
3841 ctgtatcaag ttgctagaaa tttaagtgga cagtgtcaac caattttttc agagcgtgaa
3901 gtgtcacgat tttattctct tccacttgtg actgatgcaa tggtgcataa tgatacatat
3961 tggttttctt ggtcaattcc tataacatgt tctaatattc agggctctgt ttataaggtg
4021 cagccagggt atattgtcaa tccaactcat cctaccagct tacaatatga tttaccatct
4081 catgttgtta catcaaatgc tggcgcattg aggtttgatg atcattattg tgataggtat
4141 aatcaggtct acctatgtac aaaatctgca tttgatctac aaccgtcaaa ttatcttaca
4201 atgctttatt caaatatatc agaaaatgtt tcattgacat ttcaccctga gccaagacct
4261 gatccttgtg tgtacctttc ttcatctgcc ctttattgtt attattctga ccaatgtaat
4321 cagtgtgttg tagctgtggg taactgcagt aatcaaacag ttacatatag aaattatacg
4381 tatccaatta tggatccaca gtgtagaggt tttgatcaga taaccatttc ttcgcctata
4441 gatataggtg tagattttac agctttgcca tctaggccac cattgccctt gcatttgtca
4501 tatgttaatg tcacatttaa tgtgacaata ccccatggtt taaattggac agatttggtt
4561 ttagattata gttttaaaga taaaatttat gagatttcaa agaatataac agatttacat
4621 cagcaaattt tgcaggtttc ttcttgggca tctggttggt ttcagcgtat tcgggatttt
4681 ctttataatc ttcttcctac ttggattaca tggcttactt taggttttag tttgtttagt
4741 atagtaataa gtggtattaa tattattttg ttttttgaaa tgaatggtaa ggtgaagaaa
4801 agttagtcac tttctttaga agaaggttgc caaaatg
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