GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS EEEEEE26S 4259 bp ss-mRNA VRL 28-MAY-1991 DEFINITION Eastern equine encephalomyelitis Virus(EEE) 26S mRNA genomic reg. ACCESSION X05816 KEYWORDS E1 protein; E2 protein; E3 protein; capsid protein. SOURCE Eastern equine encephalomyelitis virus RNA. ORGANISM Eastern equine encephalomyelitis virus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Togaviridae; Alphaviridae. REFERENCE 1 (bases 1 to 4259) AUTHORS Chang,G.J. and Trent,D.W. TITLE Nucleotide sequence of the genome region encoding the 26S mRNA of Eastern equine encephalomyelitis virus and the deduced amino acid sequence of the viral structural proteins JOURNAL J. Gen. Virol. 68, 2129-2142 (1987) STANDARD full automatic COMMENT SWISS-PROT; P08768; POLS$EEEV. *source: strain=82V-2137; clone=pEE-72 and pEE-14; From EMBL entry TOEEE26S; dated 02-APR-1988. FEATURES Location/Qualifiers misc_feature <1..>0 /note="ns-P4 region (some stop codons found in the 26S junction region)" precursor_RNA 121..4259 /note="put. primary transcript (26S mRNA)" CDS 179..3895 /note="common polyprotein precursor (AA 1-1239)" /codon_start=179 CDS 179..955 /note="capsid protein (AA 1-259; 259 AA)" /codon_start=179 CDS 956..1144 /note="E3 protein (AA 260-322;63 AA)" /codon_start=956 misc_feature 959..1006 /note="pos.transmembrane domain" misc_feature 986..994 /note="N-linked glycosylation site" CDS 1145..2404 /note="E2 protein (AA 323-742; 420 AA)" /codon_start=1145 misc_feature 2048..2056 /note="N-linked glycosylation site" misc_feature 2087..2095 /note="N-linked glycosylation site" misc_feature 2228..2280 /note="pos.transmembrane domain" misc_feature 2357..2389 /note="pos.transmembrane domain" CDS 2405..2572 /note="6k protein (AA 743-798; 56 AA)" /codon_start=2405 misc_feature 2506..2572 /note="pos.transmembrane domain" CDS 2573..3895 /note="E1 protein (AA 799-1239; 441 AA)" /codon_start=2573 misc_feature 2972..2980 /note="N-linked glycosylation site" misc_feature 3809..3889 /note="pos.transmembrane domain" polyA_site 4259..4259 /note="polyA site" BASE COUNT 1194 a 1088 c 982 g 995 t ORIGIN 1 atcacgctac gaggtgaact acgtgtcact aatcatcaca gcgttgacta cattagcatc 61 ttcagttagc aactttaaac acataagagg tcaccccata accctctacg gctgacctaa 121 ataggttgtg cattagtacc taacctattt atattatatt gctatctaaa tatcagagat 181 gttcccatac cctacactta actacccgcc tatggcgccg attaacccga tggcctaccg 241 ggatcctaat ccgcctaggc aggtggcgcc ctttaggcca ccacttgcag ctcaaattga 301 ggacctgaga cgttccattg ctaacctgac tttgaaacaa cgagcaccta accctccagc 361 aggaccgccc gccaaacgca agaagcctgc gccaagccta agcctggaga cgaaaaagaa 421 gcgaccacca ccacctgcca agaaacaaaa acgtaaacct aaaccaggca aacgacagcg 481 aatgtgtatg aagctagagt cagataaaac gtttccgatc atgttgaacg gacaggtgaa 541 tggttacgcg tgcgtcgtgg gtggacgagt gtttaaaccg ctgcacgtag aaggcagaat 601 agacaatgag caactggccg ctatcaagct gaagaaggcc agcatatatg accttgagta 661 cggtgatgtg ccacaatgca tgaaatcaga taccctccag tacaccagtg acaagcctcc 721 tggcttttat aactggcatc atggagctgt gcagtatgag aacaacaggt tcaccgtacc 781 acgaggggtc ggtggaaagg gcgacagcgg gagacctatt cttgacaaca aaggtagagt 841 cgtcgcaatt gtccagggtg gagtcaacga aggatccagg acggctctat cagtggtgac 901 atggaaccaa aagggggtta cagtcaaaga tacaccagag gggtcagagc catggtcgct 961 tgccactgtc atgtgcgtcc tggccaatat cacgtttcca tgtgatcaac caccctgcat 1021 gccatgctgt tatgaaaaga atccacacga aacacttacc atgctggaac agaattacga 1081 cagccgagcc tatgatcagc tgctcgatgc cgctgtgaaa tgtaatgcta ggagaaccag 1141 gagagatttg gacactcatt tcacccagta taagttggca cgcccgtata ttgctgattg 1201 ccctaactgt gggcatagtc ggtgcgacag ccctatagct atagaagaag tcagagggga 1261 tgcgcatgca ggagtcatcc gcatccagac atcagctatg ttcggtctga agaggcatgg 1321 agtcgatttg gcctacatga gtttcatgaa cggcaaaacg cagaaatcaa taaagatcga 1381 caacctgcat gtgcgcacct cagccccttg ttccctcgtg tcgcaccacg gctattacat 1441 cttggctcaa tgcccaccag gggacacggt tacagttggg tttcacgacg ggcctaaccg 1501 ccatacgtgc agacttgccc ataaggtaga attcaggcca gtgggtagag agaaataccg 1561 tcacccacct gaacatggag ttgaattacc gtgtaaccgt tacactcaca agcgtgcaga 1621 ccaaggacac tatgttgaga tgcatcaacc agggctagtt ggcgaccact ctctccttag 1681 catccacagt gccaaggtga aaattacggt accgagcggc gcccaagtga aatactactg 1741 caagtgtcca gatgtacgag agggaattac cagcagcgac catacaacca cctgcacgga 1801 tgtcaaacaa tgcagggctt acctgattga caacaaaaaa tgggtgtaca actctggaag 1861 actgcctcga ggagagggcg acacttttaa aggaaaactt catgtgccct ttgtgcctgt 1921 taaggccaag tgcatcgcca cgctggcacc ggagcctcta gttgagcaca aacaccgcac 1981 cctgatttta cacctgcacc cggaccatcc gaccttgctg acgaccagat cacttggaag 2041 tgatgcaaat ccaactcgac aatggattga gcgtccaaca actgtcaatt tcacagtcac 2101 cggagaaggg ttggagtata cctggggaaa ccatccacca aaaagagtat gggctcaaga 2161 gtcaggagaa gggaacccac atggatggcc gcacgttgtg gtagtctatt actacaacag 2221 atacccgtta accacaatta tcgggttatg cacctgtgtg gctatcatca tggtctcttg 2281 tgatcatccg tgtggctcct tttcaggact tcgcaatctt tgcataaccc cgtataaact 2341 agccccgaac gctcaagtcc caatactcct ggcgttactt tgctgcatta agccgacgag 2401 ggcagacgac accttgcaag tgctgaatta tctgtggaac aacaatcaaa actttttctg 2461 gatgcagacg cttatcccac ttgcagcgct tatcgtatgc atgcgcatgc tcgctgcctt 2521 attttgctgt gggccggctt ttttacttgt ctgcggcgct tgggccgcag cgtacgaaca 2581 cacagcagtg atgccgaaca aggtggggat cccgtacaaa gctttagtcg aacgcccagg 2641 ttatgcaccc gttcacctac agatacagct ggttaatacc aggataattc catcaactaa 2701 cctggagtac atcacctgca agtacaagac aaaagtgccg tctccagtag tgaaatgctg 2761 cggtgccact caatgtacct ccaaacccca tcctgactat cagtgtcagg tgtttacagg 2821 tgtttaccca ttcatgtggg gaggagccta ctgcttctgc gacaccgaaa acacccagat 2881 gagcgaggcg tatgtagagc gctcggaaga gtgctctatt gaccacgcaa aagcttataa 2941 agtacacaca ggcactgttc aggcaatggt gaacataact tatgggagcg tcacgtggag 3001 atctgcagat gtctacgtca atggtgaaac tcccgcgaaa ataggagatg ccaaactcat 3061 cataggtcca ctgtcatctg cgtggtcccc attcgataac aaggtggtgg tttatgggca 3121 tgaagtgtat aattacgact ttcctgagta cggcaccggc aaagcaggct cttttggaga 3181 cctgcaatca cgcacatcaa ccagcaacga tctgtacgca aacaccaact tgaagctaca 3241 acgaccccag gctggtatcg tgcacacacc tttcacccag gcgccctctg gcttcgaacg 3301 atggaaaagg gacaaagggg caccgttgaa cgacgtagcc ccgtttggct gttcgattgc 3361 cctggagccg ctccgtccag aaaattgtgc agtgggaagc atccctatat ctatagatat 3421 acccgatgcg gctttcacca gaatatctga aacaccgaca gtctcagacc tggaatgcaa 3481 aattacggag tgtacttatg cctccgattt cggtggtata gccacgttgc ctacaaatcc 3541 agtaaagcag gaaactgtcc aattcattgt ccatcaggtg ttgcagttat taaagagaat 3601 gacgtcaccc ttgctgagag cgggatcatt tacattccac ttctccactg caaacatcca 3661 tcctgctttt aagctgcagg tctgcactag tggcattacc tgcaaaggag attgcaagcc 3721 accgaaagat catatcgtcg attatccagc acaacatacc gaatccttta cgtcggcgat 3781 atccgccacc gcgtggtcgt ggctaaaagt gctggtagga ggaacatcag catttattgt 3841 tctggggctt attgctacag cagtggttgc cctagttctg ttcttccata gacattaaca 3901 tcctgtcaac cacataacac tacaggcagt gtataaggct gtcttactaa acactaaatt 3961 caccctagtt cgatgtactt ccgagctatg gtgacggtgg tgcataatgc cgcccgatgc 4021 agtgcataag gctgctatat taccaaatta taacactaag ggcatgcata atgcttggtc 4081 ctaagtaatt ttatacacac tttataatca ggcataattg ccgtatatac aattacacta 4141 caggtaatat accgcctctt ataaatacta caggcgaagc gcataatgct gccttttata 4201 tcaatttaca aaatcatatt aatttttctt ttatgttttt attttgtttt taatatttc //