GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS SINSINR 4071 bp ss-mRNA VRL 28-MAY-1991 DEFINITION Sindbis virus intracellular 26S RNA. ACCESSION V01403 KEYWORDS polyprotein. SOURCE Sindbis virus RNA. ORGANISM Sindbis virus Viridae; ss-RNA enveloped viruses; Positive strand RNA virus; Togaviridae; Alphaviridae. REFERENCE 1 (bases 1 to 4071) AUTHORS Rice,C.M. and Strauss,J.H. TITLE Nucleotide sequence of the 26S mRNA of sindbis virus and deduced sequence of the encoded virus structural proteins JOURNAL Proc. Natl. Acad. Sci. U.S.A. 78, 2062-2066 (1981) STANDARD full automatic COMMENT From EMBL entry TOSINR; dated 06-JUL-1989. FEATURES Location/Qualifiers CDS 19..3753 /note="reading frame (unprocessed protein)" /codon_start=19 CDS 19..810 /note="reading frame C" /codon_start=19 CDS 811..1002 /note="reading frame E3" /codon_start=811 CDS 1003..2271 /note="reading frame E2 (3' end uncertain)" /codon_start=1003 CDS 2272..2436 /note="reading frame 8K protein" /codon_start=2272 CDS 2437..3753 /note="reading frame E1" /codon_start=2437 BASE COUNT 1110 a 1121 c 995 g 843 t 2 others ORIGIN 1 tactacaaca ccaccaccat gaatagagga ttctttaaca tgctcggccg ccgccccttc 61 ccggccccca ctgccatgtg gaggccgcgg agaaggaggc aggcggcccc gatgcctgcc 121 cgcaacgggc tggcttctca aatccagcaa ctgaccacag ccgtcagtgc cctagtcatt 181 ggacaggcaa ctagacctca acccccacgt ccacgcccgc caccgcgcca gaagaagcag 241 gcgcccaagc aaccaccgaa gccgaagaaa ccaaaaacgc aggagaagaa gaagaagcaa 301 cctgcaaaac ccaaacccgg aaagagacag cgcatggcac ttaagttgga ggccgacaga 361 ttgttcgacg tcaagaacga ggacggagat gtcatcgggc acgcactggc catggaagga 421 aaggtaatga aacctctgca cgtgaaagga accatcgacc accctgtgct atcaaagctc 481 aaatttacca agtcgtcagc atacgacatg gagttcgcac agttgccagt caacatgaga 541 agtgaggcat tcacctacac cagtgaacac cccgaaggat tctataactg gcaccacgga 601 gcggtgcagt atagtggagg tagatttacc atccctcgcg gagtaggagg cagaggagac 661 agcggtcgtc cgatcatgga taactccggt cgggttgtcg cgatagtcct cggtggcgct 721 gatgaaggaa cacgaactgc cctttcggtc gtcacctgga atagtaaagg gaagacaatt 781 aagacgaccc cggaagggac agaagagtgg tccgcagcac cactggtcac ggcaatgtgt 841 ttgctcggaa atgtgagctt cccatgcgac cgcccgccca catgctatac ccgcgaacct 901 tccagagccc tcgacatcct tgaagagaac gtgaaccatg aggcctacga taccctgctc 961 aatgccatat tgcggtgcgg atcgtctggc agaagcaaaa gaagcgtcat tgacggcttt 1021 accctgacca gcccctactt gggcacatgc tcgtactgcc accatactga accgtgcttc 1081 agccctgtta agatcgagca ggtctgggac gaagcggacg ataacaccat acgcatacag 1141 acttccgccc agtttggata cgaccaaagc ggagcagcaa gcgcaaacaa gtaccgctac 1201 atgtcgctta agcaggatca caccgttaaa gaaggcacca tggatgacat caagattagc 1261 acctcaggac cgtgtagaag gcttagctac aaaggatact ttctcctcgc aaaatgccct 1321 ccaggggaca gcgtaacggt tagcatagtg agtagcaact cagcaacgtc atgtacactg 1381 gcccgcaaga taaaaccaaa attcgtggga cgggaaaaat atgatctacc tcccgttcac 1441 ggtaaaaaaa ttccttgcac agtgtacgac cgtctgaaag aaacaactgc aggctacatc 1501 actatgcaca ggccgagacc gcacgcttat acatcctacc tggaagaatc atcagggaaa 1561 gtttacgcaa agccgccatc tgggaagaac attacgtatg agtgcaagtg cggcgactac 1621 aagaccggaa ccgtttcgac ccgcaccgaa atcactggtt gcaccgccat caagcagtgc 1681 gtcgcctata agagcgacca aacgaagtgg gtcttcaact caccggactt gatcagacat 1741 gacgaccaca cggcccaagg gaaattgcat ttgcctttca agttgatccc gagtacctgc 1801 atggtccctg ttgcccacgc gccgaatgta atacatggct ttaaacacat cagcctccaa 1861 ttagatacag accacttgac attgctcacc accaggagac taggggcaaa cccggaacca 1921 accactgaat ggatcgtcgg aaagacggtc agaaacttca ccgtcgaccg agatggcctg 1981 gaatacatat ggggaaatca tgagccagtg agggtctatg cccaagagtc agcaccagga 2041 gaccctcacg gatggccaca cgaaatagta cagcattact accatcgcca tcctgtgtac 2101 accatcttag ccgtcgcatc agctaccgtg gcgatgatga ttggcgtaac tgtcgcagtg 2161 ttatgtgcct gtaaagcgcg ccgtgagtgc ctgacgccat acgccctggc cccaaacgcc 2221 gtaatcccaa cttcgctggc actcttgtgc tgcgtcaggt cggccaatgc tgaaacgttc 2281 accgagacca tgagttactt gtggtcgaac agtcagccgt tcttctgggt ccagttgtgc 2341 atacctttgg ccgctttcat cgttctaatg cgctgctgct cctgctgcct gcctttttta 2401 gtggttgccg gcgcctacct ggcgaaggta gacgcctacg aacatgcgac cactgttcca 2461 aatgtgccac agataccgta taaggcactt gttgaaaggg cagggtatgc cccgctcaat 2521 ttggagatca ctgtcatgtc ctcggaggtt ttgccttcca ccaaccaaga gtacattacc 2581 tgcaaattca ccactgtggt cccctcccca aaaatcaaat gctgcggctc cttggaatgt 2641 cagccggccg ctcatgcaga ctatacctgc aaggtcttcg gaggggtcta cccctttatg 2701 tggggaggag cgcaatgttt ttgcgacagt gagaacagcc agatgagtga ggcgtacgtc 2761 gaattgtcag cagtatgcgc gtctgaccac gcgcaggcga ttaaggtgca cactgccgcg 2821 atgaaagtag gactgcgtat tgtgtacggg aacactacca gtttcctaga tgtgtacgtg 2881 aacggagtca caccaggaac gtctaaagac ttgaaagtca tagctggacc aatttcagca 2941 tcgtttacgc cattcgatca taaggtcgtt atccatcgcg gcctggtgta caactatgac 3001 ttcccggaat atggagcgat gaaaccagga gcgtttggag acattcaagc tacctccttg 3061 actagcaagg atctcatcgc cagcacagac attaggctac tcaagccttc cgccaagaac 3121 gtgcatgtcc cgtacacgca ggcctcatca ggatttgaga tgtggaaaaa caactcaggc 3181 cgcccactgc aggaaaccgc acctttcggg tgtaagattg cagtaaatcc gctccgagcg 3241 gtggactgtt catacgggaa cattcccatt tctattgaca tcccgaacgc tgcctttatc 3301 aggacatcag atgcaccact ggtctcaaca gtcaaatgtg aagtcagtga gtgcacttat 3361 tcagcagact tcggcgggat ggccaccctg cagtatgtat ccgaccgcga aggtcaatgc 3421 cccgtacatt cgcattcgag cacagcaact ctccaagagt cgacagtaca tgtcctggag 3481 aaaggagcgg tgacagtaca ctttagcacc gcgagtccac aggcgaactt tatcgtatcg 3541 ctgtgtggga agaagacaac atgcaatgca gaatgtaaac caccagctga ccatatcgtg 3601 agcaccccgc acaaaaatga ccaagaattt caagccgcca tctcaaaaac atcatggagt 3661 tggctgtttg cccttttcgg cggcgcctcg tcgctattaa ttataggact tatgattttt 3721 gcttgcagca tgatgctgac tagcacacga agatgaccgc tacgccccaa tgatccgacc 3781 agcaaaactc gatgtacttc cgaggaactg atgtgcataa tgcatcaggc tggtacatta 3841 gatcgcttac cgcgggcaat atagcaacac taaaaactcg atgtacttcc gaggaagcgc 3901 agtgcataat ntgcgcngtg ttgccacata accactatat taaccattta tctagcggac 3961 gccaaaaact caatgtattt ctgaggaagc gtggtgcata atgccacgca gcgtctgcat 4021 aacttttatt atttctttta ttaatcaaca aaattttgtt tttaacattt c //