GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS SINSINR 4071 bp ss-mRNA VRL 28-MAY-1991
DEFINITION Sindbis virus intracellular 26S RNA.
ACCESSION V01403
KEYWORDS polyprotein.
SOURCE Sindbis virus RNA.
ORGANISM Sindbis virus
Viridae; ss-RNA enveloped viruses; Positive strand RNA virus;
Togaviridae; Alphaviridae.
REFERENCE 1 (bases 1 to 4071)
AUTHORS Rice,C.M. and Strauss,J.H.
TITLE Nucleotide sequence of the 26S mRNA of sindbis virus and deduced
sequence of the encoded virus structural proteins
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 78, 2062-2066 (1981)
STANDARD full automatic
COMMENT From EMBL entry TOSINR; dated 06-JUL-1989.
FEATURES Location/Qualifiers
CDS 19..3753
/note="reading frame (unprocessed protein)"
/codon_start=19
CDS 19..810
/note="reading frame C"
/codon_start=19
CDS 811..1002
/note="reading frame E3"
/codon_start=811
CDS 1003..2271
/note="reading frame E2 (3' end uncertain)"
/codon_start=1003
CDS 2272..2436
/note="reading frame 8K protein"
/codon_start=2272
CDS 2437..3753
/note="reading frame E1"
/codon_start=2437
BASE COUNT 1110 a 1121 c 995 g 843 t 2 others
ORIGIN
1 tactacaaca ccaccaccat gaatagagga ttctttaaca tgctcggccg ccgccccttc
61 ccggccccca ctgccatgtg gaggccgcgg agaaggaggc aggcggcccc gatgcctgcc
121 cgcaacgggc tggcttctca aatccagcaa ctgaccacag ccgtcagtgc cctagtcatt
181 ggacaggcaa ctagacctca acccccacgt ccacgcccgc caccgcgcca gaagaagcag
241 gcgcccaagc aaccaccgaa gccgaagaaa ccaaaaacgc aggagaagaa gaagaagcaa
301 cctgcaaaac ccaaacccgg aaagagacag cgcatggcac ttaagttgga ggccgacaga
361 ttgttcgacg tcaagaacga ggacggagat gtcatcgggc acgcactggc catggaagga
421 aaggtaatga aacctctgca cgtgaaagga accatcgacc accctgtgct atcaaagctc
481 aaatttacca agtcgtcagc atacgacatg gagttcgcac agttgccagt caacatgaga
541 agtgaggcat tcacctacac cagtgaacac cccgaaggat tctataactg gcaccacgga
601 gcggtgcagt atagtggagg tagatttacc atccctcgcg gagtaggagg cagaggagac
661 agcggtcgtc cgatcatgga taactccggt cgggttgtcg cgatagtcct cggtggcgct
721 gatgaaggaa cacgaactgc cctttcggtc gtcacctgga atagtaaagg gaagacaatt
781 aagacgaccc cggaagggac agaagagtgg tccgcagcac cactggtcac ggcaatgtgt
841 ttgctcggaa atgtgagctt cccatgcgac cgcccgccca catgctatac ccgcgaacct
901 tccagagccc tcgacatcct tgaagagaac gtgaaccatg aggcctacga taccctgctc
961 aatgccatat tgcggtgcgg atcgtctggc agaagcaaaa gaagcgtcat tgacggcttt
1021 accctgacca gcccctactt gggcacatgc tcgtactgcc accatactga accgtgcttc
1081 agccctgtta agatcgagca ggtctgggac gaagcggacg ataacaccat acgcatacag
1141 acttccgccc agtttggata cgaccaaagc ggagcagcaa gcgcaaacaa gtaccgctac
1201 atgtcgctta agcaggatca caccgttaaa gaaggcacca tggatgacat caagattagc
1261 acctcaggac cgtgtagaag gcttagctac aaaggatact ttctcctcgc aaaatgccct
1321 ccaggggaca gcgtaacggt tagcatagtg agtagcaact cagcaacgtc atgtacactg
1381 gcccgcaaga taaaaccaaa attcgtggga cgggaaaaat atgatctacc tcccgttcac
1441 ggtaaaaaaa ttccttgcac agtgtacgac cgtctgaaag aaacaactgc aggctacatc
1501 actatgcaca ggccgagacc gcacgcttat acatcctacc tggaagaatc atcagggaaa
1561 gtttacgcaa agccgccatc tgggaagaac attacgtatg agtgcaagtg cggcgactac
1621 aagaccggaa ccgtttcgac ccgcaccgaa atcactggtt gcaccgccat caagcagtgc
1681 gtcgcctata agagcgacca aacgaagtgg gtcttcaact caccggactt gatcagacat
1741 gacgaccaca cggcccaagg gaaattgcat ttgcctttca agttgatccc gagtacctgc
1801 atggtccctg ttgcccacgc gccgaatgta atacatggct ttaaacacat cagcctccaa
1861 ttagatacag accacttgac attgctcacc accaggagac taggggcaaa cccggaacca
1921 accactgaat ggatcgtcgg aaagacggtc agaaacttca ccgtcgaccg agatggcctg
1981 gaatacatat ggggaaatca tgagccagtg agggtctatg cccaagagtc agcaccagga
2041 gaccctcacg gatggccaca cgaaatagta cagcattact accatcgcca tcctgtgtac
2101 accatcttag ccgtcgcatc agctaccgtg gcgatgatga ttggcgtaac tgtcgcagtg
2161 ttatgtgcct gtaaagcgcg ccgtgagtgc ctgacgccat acgccctggc cccaaacgcc
2221 gtaatcccaa cttcgctggc actcttgtgc tgcgtcaggt cggccaatgc tgaaacgttc
2281 accgagacca tgagttactt gtggtcgaac agtcagccgt tcttctgggt ccagttgtgc
2341 atacctttgg ccgctttcat cgttctaatg cgctgctgct cctgctgcct gcctttttta
2401 gtggttgccg gcgcctacct ggcgaaggta gacgcctacg aacatgcgac cactgttcca
2461 aatgtgccac agataccgta taaggcactt gttgaaaggg cagggtatgc cccgctcaat
2521 ttggagatca ctgtcatgtc ctcggaggtt ttgccttcca ccaaccaaga gtacattacc
2581 tgcaaattca ccactgtggt cccctcccca aaaatcaaat gctgcggctc cttggaatgt
2641 cagccggccg ctcatgcaga ctatacctgc aaggtcttcg gaggggtcta cccctttatg
2701 tggggaggag cgcaatgttt ttgcgacagt gagaacagcc agatgagtga ggcgtacgtc
2761 gaattgtcag cagtatgcgc gtctgaccac gcgcaggcga ttaaggtgca cactgccgcg
2821 atgaaagtag gactgcgtat tgtgtacggg aacactacca gtttcctaga tgtgtacgtg
2881 aacggagtca caccaggaac gtctaaagac ttgaaagtca tagctggacc aatttcagca
2941 tcgtttacgc cattcgatca taaggtcgtt atccatcgcg gcctggtgta caactatgac
3001 ttcccggaat atggagcgat gaaaccagga gcgtttggag acattcaagc tacctccttg
3061 actagcaagg atctcatcgc cagcacagac attaggctac tcaagccttc cgccaagaac
3121 gtgcatgtcc cgtacacgca ggcctcatca ggatttgaga tgtggaaaaa caactcaggc
3181 cgcccactgc aggaaaccgc acctttcggg tgtaagattg cagtaaatcc gctccgagcg
3241 gtggactgtt catacgggaa cattcccatt tctattgaca tcccgaacgc tgcctttatc
3301 aggacatcag atgcaccact ggtctcaaca gtcaaatgtg aagtcagtga gtgcacttat
3361 tcagcagact tcggcgggat ggccaccctg cagtatgtat ccgaccgcga aggtcaatgc
3421 cccgtacatt cgcattcgag cacagcaact ctccaagagt cgacagtaca tgtcctggag
3481 aaaggagcgg tgacagtaca ctttagcacc gcgagtccac aggcgaactt tatcgtatcg
3541 ctgtgtggga agaagacaac atgcaatgca gaatgtaaac caccagctga ccatatcgtg
3601 agcaccccgc acaaaaatga ccaagaattt caagccgcca tctcaaaaac atcatggagt
3661 tggctgtttg cccttttcgg cggcgcctcg tcgctattaa ttataggact tatgattttt
3721 gcttgcagca tgatgctgac tagcacacga agatgaccgc tacgccccaa tgatccgacc
3781 agcaaaactc gatgtacttc cgaggaactg atgtgcataa tgcatcaggc tggtacatta
3841 gatcgcttac cgcgggcaat atagcaacac taaaaactcg atgtacttcc gaggaagcgc
3901 agtgcataat ntgcgcngtg ttgccacata accactatat taaccattta tctagcggac
3961 gccaaaaact caatgtattt ctgaggaagc gtggtgcata atgccacgca gcgtctgcat
4021 aacttttatt atttctttta ttaatcaaca aaattttgtt tttaacattt c
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