GenBank-Updates@genbank.bio.net (05/29/91)
LOCUS ZEFEPD 857 bp ss-mRNA VRT 28-MAY-1991
DEFINITION Zebrafish mRNA for ependymin
ACCESSION X52502
KEYWORDS EPD gene; glycoprotein; prepro-ependymin.
SOURCE Brachydanio rerio RNA.
ORGANISM Brachydanio rerio
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Osteichthyes;
Actinopterygii; Cypriniformes; Cyprinoidei; Cyprinidae.
REFERENCE 1 (bases 1 to 857)
AUTHORS Hoffmann,W.
JOURNAL Unpublished (1990)
STANDARD full automatic
REFERENCE 2 (bases 1 to 857)
AUTHORS Sterrer,S., Koenigstorfer,A. and Hoffmann,W.
TITLE Biosynthesis and expression of ependymin homologous sequences in
zebrafish brain
JOURNAL Neurosci. 37, 277-284 (1990)
STANDARD full automatic
COMMENT SWISS-PROT; P17561; EPD$BRARE.
*source: tissue=brain; clone=pZF-3'-L.1, pZF-3'-S.6, pZF-5'-2.16;
For goldfish ependymin I and II see <X14134> and <J04986>.
From EMBL entry BREPD; dated 05-JUL-1990.
FEATURES Location/Qualifiers
CDS 6..656
/note="prepro-polypeptide (AA -20 to 197)"
/codon_start=6
CDS 6..65
/note="signal peptide (-20 to -1)"
/codon_start=6
CDS 66..656
/note="pro-ependymin (AA 1 to 197)"
/codon_start=66
misc_feature 710..715
/note="polyA signal"
polyA_site 735..735
/note="polyA site"
misc_feature 837..842
/note="alt. polyA signal"
polyA_site 857..857
/note="alt. polyA site"
BASE COUNT 220 a 205 c 183 g 249 t
ORIGIN
1 caacgatgca tacagtcaag ctgctctgtg tggtgttctc ttgcctctgc gccatcggct
61 gggcttctca tcactctcat cggcagccat gtcattcacc acagctgacc agtggaacga
121 tgaaagtggt ttccacaggg ggtcatgacc ttgcatctgg agagttcagt tatgactcca
181 aaacgaataa atttcgtttt gttgaggaca ccactcacgc gaacaaaact tcttatatag
241 atgtgctcat acattttgaa gagggtgtac tctatgagat agacagtaaa aatgagagtt
301 gcaagaagga gactctgcag ttccgcaagc acctgatgga gattcccgtt gatgccactc
361 acgagtctga gagttacatg ggtagcccct ctctcaccga gcagggactc agagttcgtg
421 tgtggaacgg aaagtttcct gaacttcacg ctcactactc tctgtctacc acctcctgtg
481 gctgtttgac ggtctctggc tcctactatg gcgagaagaa agatcttttc ttcagcttct
541 tcggtgttga aacagaagtt gacgaccttc aagtatttgc acctccggcc tattgtgagg
601 gtgtgtcatt tgaggaggct ccagacgatc acagcttctt cgacctgttc cacgactgaa
661 gaaaacacac aagatgacct gcaaactgcc aacaatggct acatacaata ataaaaagag
721 catttaatta caaatatttc ctgtatccat ctctctttct tcagaaaatg cttgcacttt
781 ctatcttacc ttcttttttt gtcttttgca atttgtttct gcactctaat gaagtcaata
841 aagatgagct ttcgctg
//