GenBank-Updates@genbank.bio.net (02/27/91)
LOCUS ECOTNSAB 1201 bp ds-DNA BCT 27-FEB-1991 DEFINITION E.coli (strain K-12) tranposition protein A and B (tns A and tns B) gene, complete cds and 5' end, respectively. ACCESSION M37391 KEYWORDS transposition protein. SOURCE E.coli (strain K-12) transposon Tn7 DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 1201) AUTHORS Orle,K.A. and Craig,N.L. TITLE Identification of transposition proteins encoded by the bacterial transposon Tn7 JOURNAL Gene 96, 1-7 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [Unpublished (1990) Univ Calif SF, George W. Hooper Foundation, 3rdand Parnassus,] kindly submitted by K.A.Orle, 02-AUG-1990. FEATURES Location/Qualifiers misc_binding 9..30 /gene="tns B" misc_binding 29..50 /gene="tns B" misc_binding 50..71 /gene="tns B" misc_binding 70..92 /gene="tns B" CDS 135..956 /product="transposition protein A" /gene="tns A" /codon_start=135 CDS 943..1201 /pseudo /product="transposition protein B" /gene="tns B" /codon_start=943 /partial BASE COUNT 364 a 207 c 276 g 354 t ORIGIN 1 tgtgggcgga caataaagtc ttaaactgaa caaaatagat ctaaactatg acaataaagt 61 cttaaactag acagaatagt tgtaaactga aatcagtcca gttatgctgt gaaaaagcat 121 actggacttt tgttatggct aaagcaaact cttcattttc tgaagtgcaa attgcccgtc 181 gtattaaaga ggggcgtggc caagggcatg gtaaagacta tattccatgg ctaacagtac 241 aagaagttcc ttcttcaggt cgttcccacc gtatttattc tcataagacg ggacgagtcc 301 atcatttgct atctgactta gagcttgctg tttttctcag tcttgagtgg gagagcagcg 361 tgctagatat acgcgagcag ttccccttat tacctagtga taccaggcag attgcaatag 421 atagtggtat taagcatcct gttattcgtg gtgtagatca ggttatgtct actgattttt 481 tagtggactg caaagatggt ccttttgagc agtttgctat tcaagtcaaa cctgcagcgg 541 ccttacaagg cgagcgtacc ttagaaaaac tagaactaga gcgtcgctat tggcagcaaa 601 agcaaattcc ttggttcatt tttactgata aagaaataaa tcccgtagta aaagaaaata 661 ttgaatggct ttattcagtg aaaacagaag aagtttctgc ggagctttta gcacaactat 721 ccccattggc ccatatcctg caagaaaaag gagatgaaaa cattatcaat gtctgtaagc 781 aggttgatat tgcttatgat ttggagttag gccaaacatt gagtgagata cgagccttaa 841 ccgcaaatgg ttttattaag ttcaatattt ataagtcttt cagggcaaat aagtgtgcag 901 atctctgtat tagccaagta gtgaatatgg aggagttgcg ctatgtggca aattaatgag 961 gttgtgctat ttgataatga tccgtatcgc attttggcta tagaggatgg ccaagttgtc 1021 tggatgcaaa taagcgctga taaaggagtt ccacaagcta gggctgagtt gcttgctaat 1081 gcagtattta gatgaaggcc gcttagttag aactgatgac ccttatgtac atcttgattt 1141 agaagagccg tctgtagatt ctgtcagctt ccagaagcgc gaggaggatt atcgaaaaat 1201 t //
GenBank-Updates@genbank.bio.net (02/27/91)
LOCUS ECOTNSD 164 bp ds-DNA BCT 27-FEB-1991 DEFINITION E.coli (strain K-12) transposition protein D (tns D) gene, 5' end. ACCESSION M37393 KEYWORDS transposition protein. SOURCE E.coli (strain K-12) transposon Tn7 DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 164) AUTHORS Orle,K.A. and Craig,N.L. TITLE Identification of transposition proteins encoded by the bacterial transposon Tn7 JOURNAL Gene 96, 1-7 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [Unpublished (1990) Univ Calif SF, George W. Hooper Foundation, 3rdand Parsassus,] kindly submitted by K.A.Orle, 02-AUG-1990. FEATURES Location/Qualifiers CDS 48..>164 /product="transposition protein D" /gene="tns D" /codon_start=48 BASE COUNT 42 a 27 c 48 g 47 t ORIGIN 1 ggggtaatag tggatatggc gagcttattt aaacaagcag gttagccatg agaaactttc 61 ctgttccgta ctcgaatgag ctgatttata gcactattgc acgggcgggc gtttatcaag 121 ggattgttag tcctaagcag ctgttggatg aggtgtatgg caac //
GenBank-Updates@genbank.bio.net (02/27/91)
LOCUS ECOTNSC 100 bp ds-DNA BCT 27-FEB-1991 DEFINITION E.coli (strain K-12) transposition protein C (tns C) gene, 5' end. ACCESSION M37392 KEYWORDS transposition protein. SOURCE E.coli (strain K-12) transposon Tn7 DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 100) AUTHORS Orle,K.A. and Craig,N.L. TITLE Identification of transposition proteins encoded by the bacterial transposon Tn7 JOURNAL Gene 96, 1-7 (1990) STANDARD full staff_review COMMENT Draft entry and computer-readable sequence for [Unpublished (1990) Univ Calif SF, George W. Hooper Foundation, 3rdand Parnassus,] kindly submitted by K.A.Orle, 02-AUG-1990. FEATURES Location/Qualifiers CDS 25..>100 /product="transposition protein C" /gene="tns C" /codon_start=25 BASE COUNT 27 a 18 c 29 g 26 t ORIGIN 1 ggatccacca gaaaaggatg agtcatgagt gctacccgga ttcaagcagt ttatcgtgat 61 acgggggtag aggcttatcg tgataatcct tttatcgagg //
GenBank-Updates@genbank.bio.net (03/28/91)
LOCUS ECOMIAA 1328 bp ds-DNA BCT 28-MAR-1991 DEFINITION E.coli (delta)2-isopentenyl pyrophosphate transferase (miaA) gene, complete cds, and mutator protein (mutL) gene, 3' end. ACCESSION M63655 M37459 KEYWORDS (delta)2-isopentenyl pyrophosphate transferase; miaA gene; mutL gene; mutator protein. SOURCE E.coli K-12 DNA, clone pNU127. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 1328) AUTHORS Winkler,M.E. and Connolly,D.M. TITLE Structure of Escherichia coli K-12 miaA and characterization of the mutator phenotype caused by miaA insertion mutations JOURNAL Unpublished (1991) STANDARD full staff_entry FEATURES Location/Qualifiers CDS 1..63 /function="required for methyl-directed mismatch" /product="mutator protein" /gene="mutL" /codon_start=1 /partial CDS 56..1006 /product="(delta)2-isopentenyl pyrophosphate transferase" /gene="miaA" /codon_start=56 CDS 1093..1328 /note="ORF" /codon_start=1093 /partial BASE COUNT 317 a 297 c 382 g 332 t ORIGIN 95 min. on K-12 map. 1 ccgggtggtc tgttacaatc tgttgattta catccggcga taaaagccct gaaagatgag 61 tgatatcagt aaggcgagcc tgcctaaggc gatttttttg atggggccga cggcctccgg 121 taaaacggcg ttagccattg agctgcgtaa aattttacca gtagagttga taagcgttga 181 ttctgccctt atttacaaag ggatggatat cgggacggcg aagccgaacg ctgaagagtt 241 actcgccgcg ccgcaccgat tgctggatat tcgcgatccg tcgcaggctt actcggctgc 301 tgattttcgc cgcgatgcgc tggcggaaat ggccgatatc accgcggcgg ggcggatccc 361 actgttagtg ggcggtacga tgttgtattt caaggcattg ctggaagggt tgtcgccgct 421 accgtcggca gacccggaag tacgggccag aattgagcaa caggcggcag agcaaggttg 481 ggagtcattg catcgtcaac ttcaggaggt agatccggtt gcggcagcaa ggattcatcc 541 aaatgatcca caaaggcttt cccgggcact ggaagttttt ttcatttcgg gtaaaacttt 601 aacggaactg acgcaaacgt caggagacgc tctaccgtat caggtgcatc agttcgccat 661 cgccccggcg agccgtgaac tgctccatca acgcattgag cagcgttttc atcagatgtt 721 ggcttcaggt tttgaagcag aagtccgggc gctttttgcc cgaggagatt tgcatacgga 781 cttgccttcc attcgttgcg tgggttatcg ccagatgtgg tcttaccttg aaggcgaaat 841 ctcatacgat gaaatggttt atcgaggtgt ttgcgccacg agacagttgg cgaagcggca 901 gataacctgg ctgcgtggtt gggaaggggt tcactggctt gacagtgaaa aaccagaaca 961 ggcgcgtgac gaagtattac aggttgttgg tgctatcgca ggctgaatgt gtacaattga 1021 gacgtatcgt gcgcaatttt ttcaggaatc gaaaggttca aagtacaaat aagcatataa 1081 ggaaaagaga gaatggctaa ggggcaatct ttacaagatc cgttcctgaa cgcactgcgt 1141 cgggaacgtg ttccagtttc tatttatttg gtgaatggta ttaagctgca agggcaaatc 1201 gagtcttttg atcagttcgt gatcctgttg aaaaacacgg tcagccagat ggtttacaag 1261 cacgcgattt ctactgttgt cccgtctcgc ccggtttctc atcacagaac aacgccggtg 1321 gcggtacc //
GenBank-Updates@genbank.bio.net (04/24/91)
LOCUS ECOGNDG 1687 bp ds-DNA BCT 24-APR-1991 DEFINITION E.coli (strain ECOR4) 6-phosphogluconate dehydrogenase (gnd) gene, complete cds. ACCESSION M64324 KEYWORDS 6-phosphogluconate dehydrogenase; gnd gene. SOURCE E.coli (strain ECOR4, individual_isolate RM39A) DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Dykhuizen,D.E. and Green,L. TITLE Recombination in Escherichia coli and the biological species definition JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers mRNA 87..1567 /product="6-phosphogluconate dehydrogenase" /gene="gnd" RBS 125..130 /gene="gnd" CDS 137..1543 /EC_number="1.1.1.44" /product="6-phosphogluconate dehydrogenase" /gene="gnd" /codon_start=137 terminator 1568..1599 /note="factor independent terminator" /gene="gnd" BASE COUNT 421 a 416 c 438 g 412 t ORIGIN 44 min. on K-12 map. 1 attttttgaa atgccatttt tttacgcata actggatttt gtaatatctc agtattaata 61 ttggtttaaa ttttattctg accatattca agccgcgtat accttgtgcg gcgaccacac 121 ctgacaggag tatgtaatgt ctaagcaaca gatcggcgtc gtcggtatgg cagtgatggg 181 gcgcaacctg gcgctcaaca tcgaaagccg aggttatacc gtctccatct tcaaccgctc 241 ccgcgagaaa actgaagaag ttgttgccga gaacccgggt aagaaactgg ttccttatta 301 cacggtgaaa gagttcgtcg agtctcttga aaccccacgt cgtatcctgt taatggtaaa 361 agcaggggcg ggaactgatg ctgctatcga ttccctgaag ccgtaccttg ataaaggcga 421 catcattatt gatggtggta acaccttctt ccaggacact atccgtcgta accgtgagct 481 gtcagcagaa ggttttaact tcatcggtac cggcgtgtcc ggtggtgaag aaggggcgct 541 gaaaggccca tctatcatgc ctggtggcca gaaagaagcg tatgagctgg ttgcgcctat 601 cctgaccaag attgccgctg ttgccgaaga tggtgaaccg tgcgtaacct acatcggcgc 661 tgatggcgca ggtcattatg tgaagatggt gcataacggt attgaatacg gcgacatgca 721 gctgattgct gaagcctatt ccttgctgaa aggcggcctg aacctgtcta acgaagagct 781 ggctaccacc ttcaccgagt ggaatgaagg cgagctgagc agctacctga tcgatatcac 841 taaagacatc ttcaccaaaa aagatgaaga cggtaactac ctggttgatg tgatcctgga 901 cgaagcggcg aacaaaggca ccggtaaatg gaccagccag agctctctgg atctgggtga 961 accactgtcg ctgatcaccg aatccgtatt cgcgcgctac atctcttctc tgaaagacca 1021 gcgcgttgcg gcatctaaag tgctgtccgg cccacaggct aaactggctg gtgataaagc 1081 agagtttgtt gagaaagttc gtcgcgcgct gtatttgggc aaaatcgtct cttatgccca 1141 gggtttctct caactgcgtg ccgcatctga cgaatacaac tgggatctga actacggtga 1201 aatcgcgaag atcttccgcg cgggctgcat cattcgcgcg cagttcctgc agaaaatcac 1261 cgacgcctat gccgaaaaca aaggtatcgc gaacctgctg ctggctccgt acttcaaaaa 1321 tatcgctgac gattatcagc aagcgctgcg tgatgtggtg gcttatgctg tgcagaacgg 1381 tattccggta ccgaccttct cagcagcggt agcctactac gacagctacc gcgctgcggt 1441 actgcctgct aacctgatcc aggcccagcg cgactacttt ggtgctcata cgtataaacg 1501 caccgataaa gaaggtgcgt tccacaccga atggctggat taatctgatt tagtctaact 1561 gtgaatccag gcccggagtg ctcctccggg cttttaattg ccaaaaaatg ggattcagtc 1621 aggtccgata tccggtgttg tacgaatcac gatatactgt cgatcgagag ccgatgtgcc 1681 agttgtt //
GenBank-Updates@genbank.bio.net (04/24/91)
LOCUS ECONDGH 1831 bp ds-DNA BCT 24-APR-1991 DEFINITION E.coli (strain ECOR16) 6-phosphogluconate dehydrogenase (gnd) gene, complete cds. ACCESSION M64325 KEYWORDS 6-phosphogluconate dehydrogenase; gnd gene. SOURCE E.coli (strain ECOR16, individual_isolate RM191F) DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Dykhuizen,D.E. and Green,L. TITLE Recombination in Escherichia coli and the biological species definition JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers mRNA 153..1676 /product="6-phosphogluconate dehydrogenase" /gene="gnd" /partial RBS 258..263 /gene="gnd" CDS 270..1676 /EC_number="1.1.1.44" /product="6-phosphogluconate dehydrogenase" /gene="gnd" /codon_start=270 terminator 1680..1723 /note="potential terminator" /gene="gnd" BASE COUNT 475 a 397 c 438 g 521 t ORIGIN 44 min. on K-12 map. 1 caattattta tttaggcgtg ggcttgtatt aaaaatgcat ctgcaaacat tcattccaag 61 agctggtaat agataatttt gacctcttgt attacagaat aaaggatttg ttgatttcgt 121 taaatatcaa ttgtatagtg ttgaaactat gcagttgata aattgaagtt tatattggcg 181 catttatcta tgtttagtaa tgcccagtcg tataatatcg aaatgagctg cgtacttgtc 241 gcggtgacca aaccagacag gagtatgtaa tgtctaagca acagatcggg gttgtcggta 301 tggcagttat ggggcgtaat ctagcgctca acatcgaaag ccgtggttat accgtctccg 361 ttttcaaccg ctcccgtgag aagaccgaag aagtgattgc tgaaaatcct ggcaagaaac 421 tggtccctta ctacacagta caagagtttg ttgaatccct tgaaacacca cgccgtatcc 481 tgttgatggt gaaggctggg gctggtacag atagcgccat cgattccctg aagccttacc 541 ttgataaagg cgacatcatc attgatggtg gcaacacctt cttccaggac accatccgtc 601 gtaaccgtga attgtctgcc gaaggtttta actttatcgg taccggtgtt tccggtggtg 661 aagagggggc tctgaaaggg ccttccatca tgcctggtgg gcagaaagaa gcctatgagc 721 tggttgctcc gattctgaag cagatcgcgg cggttgctga agacggtgag ccgtgtgtga 781 cttatatagg tgctgacggt gctggccatt atgtgaagat ggttcataac ggcatcgagt 841 atggtgacat gcagctgatt gctgaagctt atgcgctttt gaaaggtggt ctggcactat 901 ccaacgaaga gctggcgcaa acctttaccg aatggaacga aggtgaactg agcagctact 961 tgatcgacat tactaaagat atcttcacca aaaaggatga agagggtaac tacctcgttg 1021 atgttattct tgatgaagcc gcaaataaag gtaccggcaa gtggaccagc caaagctcac 1081 tggatctcgg cgaacctctg tctctgatca ccgagtctgt ttttgctcgt tatatctctt 1141 ctctgaaaga ccagcgtgta gccgcttcga aagtgctgag tggtccgcag gctacgccgg 1201 ccggtgataa agctgaattt atcgaaaaag ttcgtcgtgc gttgtacctc ggtaaaatcg 1261 tttcctatgc tcagggcttc tcccagctgc gtgctgcttc tgatgaatac aactgggatc 1321 ttaactacgg cgagatcgct aagattttcc gcgctggctg catcattcgt gcgcagttcc 1381 tgcagaagat caccgatgct tattcgcaaa acgctggcat tgctaacctc ctgctggcac 1441 cgtacttcaa acagatcgct gatgactatc agcaggcact gcgtgatgtc gtggcctatg 1501 ccgtgcagaa tggtattccg gtaccaacgt tctctgccgc aattgcctac tatgacagct 1561 accgttccgc tgttctgccc gctaacctga ttcaggctca gcgtgattac tttggtgcgc 1621 acacctataa gcgcactgat aaagaaggcg ttttccacac tgagtggtta gattaatatt 1681 tatattatta gaccttcata tctttattga aggtctaata ataaagcttg agcatcatca 1741 agatctatta tgataaattg cgaaaattaa gaatttcgct atttgttttt aaagtattgc 1801 ttcgatatta tcccataaac ttacatctca a //
GenBank-Updates@genbank.bio.net (04/24/91)
LOCUS ECONDGI 770 bp ds-DNA BCT 24-APR-1991 DEFINITION E.coli (strain ECOR45) 6-phosphogluconate dehydrogenase (gnd) gene, partial cds. ACCESSION M64326 KEYWORDS 6-phosphogluconate dehydrogenase; gnd gene. SOURCE E.coli (strain ECOR45, individual_isolate RM201C) DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Dykhuizen,D.E. and Green,L. TITLE Recombination in Escherichia coli and the biological species definition JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers CDS 1..770 /EC_number="1.1.1.44" /product="6-phosphogluconate dehydrogenase" /gene="gnd" /codon_start=3 /partial BASE COUNT 194 a 179 c 206 g 191 t ORIGIN 44 min. on K-12 map. 1 ctgcagaagg ctttaacttc attggtaccg gtgtttctgg cggtgaagaa ggtgcgctga 61 aaggtccttc cattatgcct ggtggacaga aagaagccta tgaactggtt gcgccgatcc 121 tgaccaaaat cgccgcagtg gctgaagacg gcgaaccgtg cgttacctat attggttccg 181 atggtgcagg tcattatgtg aagatggttc acaacggtat tgaatacggt gatatgcagt 241 tgattgccga agcctattct ctgctaaaag gtggcctgaa ccttaccaac gaagaactgg 301 cacagacctt tactgaatgg aataacggtg aactgagcag ctacctgatc gacatcacca 361 aagatatctt caccaaaaaa gatgaagatg gtaactacct ggttgatgtg attctggatg 421 aagcagcaaa taaaggtacg ggcaaatgga ccagccagag tgcgctggat ctcggcgaac 481 cgctgtcgct gattaccgag tctgtgtttg cacgttatat ctcttctctg aaagatcagc 541 gcgttgccgc ttctaaagtt ctctctggcc cgcaagcgca gccagcaggc gataaggctg 601 agttcatcga aaaagttcgt cgtgcgctgt atctgggcaa aatcgtttct tacgctcagg 661 gcttctctca actgcgtgct gcgtctgaag agtacaactg ggatctgaac tacggcgaaa 721 tcgcgaagat tttccgtgct ggctgcatca tccgtgcgca gttcctgcag //
GenBank-Updates@genbank.bio.net (04/24/91)
LOCUS ECONDGJ 770 bp ds-DNA BCT 24-APR-1991 DEFINITION E.coli (strain ECOR67) 6-phosphogluconate dehydrogenase (gnd) gene, partial cds. ACCESSION M64327 KEYWORDS 6-phosphogluconate dehydrogenase; gnd gene. SOURCE E.coli (strain ECOR67, individual_isolate RM217C) DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Dykhuizen,D.E. and Green,L. TITLE Recombination in Escherichia coli and the biological species definition JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers CDS 1..770 /EC_number="1.1.1.44" /product="6-phosphogluconate dehydrogenase" /gene="gnd" /codon_start=3 /partial BASE COUNT 194 a 184 c 207 g 185 t ORIGIN 44 min. on K-12 map. 1 ctgcagaagg ctttaacttc attggtaccg gtgtttccgg tggtgaagaa ggtgcgctga 61 aaggtccttc cattatgcct ggtggtcaga aagaagccta tgaactggtt gcgccgatcc 121 tgaccaaaat cgccgcagtg gctgaagacg gcgaaccgtg cgttacctat attggtgccg 181 atggtgcagg tcattatgtg aagatggttc acaacggtat tgaatacggc gatatgcagc 241 tgattgctga agcctattct ctgcttaaag gtggcctgaa tctcaccaac gaagaactga 301 cgcagacgtt taccgagtgg aataacggtg aactaagcag ctacctgatc gacattacca 361 aagacatctt cactaaaaaa gatgaagacg gtaactacct ggttgatgtg atcctggatg 421 aagcggctaa caaaggtacc ggtaaatgga ccagccagag cgcactggat ctcggcgaac 481 cgctgtcgct gattaccgag tctgtgtttg cacgatacat ctcttctctg aaagatcagc 541 gcgttgctgc gtctaaagtt ctctctggcc cacaagcgca gccagctggc aacaaggctg 601 agttcatcga aaaagttcgc cgtgcactgt atctgggcaa aatcgtttct tacgctcagg 661 ggttctctca actgcgtgcg gcgtctgaag agtacaactg ggatctgaac tacggcgaaa 721 tcgcgaagat tttccgtgct ggctgcatca tccgtgcgca gttcctgcag //
GenBank-Updates@genbank.bio.net (04/24/91)
LOCUS ECONDGK 1787 bp ds-DNA BCT 24-APR-1991 DEFINITION E.coli (strain ECOR69) 6-phosphogluconate dehydrogenase (gnd) gene, complete cds. ACCESSION M64328 KEYWORDS 6-phosphogluconate dehydrogenase; gnd gene. SOURCE E.coli (strain ECOR69, individual_isolate RM45E) DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Dykhuizen,D.E. and Green,L. TITLE Recombination in Escherichia coli and the biological species definition JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers RBS 241..245 /gene="gnd" CDS 252..1658 /EC_number="1.1.1.44" /product="6-phosphogluconate dehydrogenase" /gene="gnd" /codon_start=252 terminator 1686..1716 /note="rho-independent terminator" /gene="gnd" BASE COUNT 473 a 405 c 426 g 483 t ORIGIN 44 min. on K-12 map. 1 ccaatagtac atatagttgg tgggggcatg gttaaatact ttcgaagata aaatagttgt 61 ttcccctcgt aagtggtttg ctggaaataa taaatctaag ttgaccatgg atagttggat 121 taatctttga ttatgctgtg tgtttttttt aaaatatgat atccattcat aatttgtaat 181 tttgatatat tatttttaga ctaaaatgtc aatctgcaac attccgtagt aatccctgac 241 aggagtaaac aatgtcaaag caacagatcg gcgtagtcgg tatggcagtg atggggcgta 301 accttgcgct caacatcgaa agccgtggtt ataccgtctc tattttcaac cgctcccgtg 361 agaaaacgga agaagtaatt gccgaaaacc cgggcaagaa actggttcct tactatacgg 421 tgaaagagtt tgttgaatct ctggaaacgc ctcgtcgcat cctgttaatg gtgaaagcag 481 gtgcaggcac ggatgctgct attgattccc tcaagccata cctcgataaa ggtgacatca 541 tcattgatgg cggtaacacc ttcttccagg acaccattcg tcgtaaccgt gagctttctg 601 ccgaaggctt taacttcatt ggtaccggtg tttccggtgg tgaagagggc gcgctgaaag 661 gtccttccat tatgcctggt ggccagaaag aagcctatga actggttgct ccgatcctga 721 ccaaaatcgc cgcagtagct gaagatggtg agccatgcgt tacctatatt ggtgccgatg 781 gcgcaggtca ctatgtgaag atggttcaca acggtattga atacggtgat atgcagctga 841 ttgctgaagc ctattctctg cttaaaggtg gcctgaatct ctctaacgaa gaactggcac 901 agacctttac cgagtggaat aacggtgaac tgagcagcta cctgatcgac atcaccaaag 961 atatcttcac caaaaaagat gaagacggta actacctggt tgatgtgatt ctggatgaag 1021 cagcaaacaa aggtaccggt aaatggacca gccagagcgc gctggatctc ggcgaaccgc 1081 tgtcgctgat taccgagtct gtgtttgcac gttatatctc gtctctgaaa gatcagcgcg 1141 ttgccgcgtc taaagttctc tctggcccgc aagcacagcc agcaggcgac aaggctgagt 1201 tcatcgaaaa agttcgccgt gcgcagtatc ttggcaaaat cgtttcttac gctcagggct 1261 tctctcagct gcgtgctgcg tctgaagaat acaactgggc tctgaactac ggcgaaatcg 1321 cgaagatttt ccgtgctggc tgcatcatcc gtgcgcagtt cctgcagaaa atcaccgatg 1381 cttatgccga aaatccgcag atcgctaacc tgctgctggc tccgtacttc aagcaaattg 1441 ccgatgacta ccagcaggcg ctgcgtgatg tcgtcgcata tgcagtacag aacggtatcc 1501 cggttccgac cttcgccgct gcggttgcct attacgatag ctaccgtgcc gctgttctgc 1561 ctgcgaacct gatccaggca cagcgtgact atttcggtgc gcatacttat aagcgcattg 1621 ataaagaagg tgtgttccat actgaatggc tggattaatc tgatttaacc aacaataaaa 1681 ttgaggcccg gcgtatattg caccgggctt ttttttgcca attatcttat agactaaatt 1741 tcactgctta atattaactt aataaatatc agctatctat aagaaat //
GenBank-Updates@genbank.bio.net (04/24/91)
LOCUS ECONDGL 1879 bp ds-DNA BCT 24-APR-1991 DEFINITION E.coli (strain ECOR70) 6-phosphogluconate dehydrogenase (gnd) gene, complete cds. ACCESSION M64329 KEYWORDS 6-phosphogluconate dehydrogenase; gnd gene. SOURCE E.coli (strain ECOR70, individual_isolate RM70B) DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Dykhuizen,D.E. and Green,L. TITLE Recombination in Escherichia coli and the biological species definition JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers mRNA (278.311)..1789 /note="promoter and mRNA" /product="6-phosphogluconate dehydrogenase" /gene="gnd" RBS 347..351 /gene="gnd" CDS 358..1764 /EC_number="1.1.1.44" /product="6-phosphogluconate dehydrogenase" /gene="gnd" /codon_start=358 terminator 1790..1820 /note="rho-independent terminator" /gene="gnd" BASE COUNT 496 a 408 c 436 g 539 t ORIGIN 44 min. on K-12 map. 1 tttaatacct cattacaatg ctgagggttt gatgtatagt atcattatat ctcaattctt 61 tacatgcttt atttataacc ctaaacgtgt tataaataaa attggattag ataaagttaa 121 ttatattaaa agattaatgg tgcacttttt gtttatgttg actcttattt ttatggggtt 181 atattttcaa aatgatgata tattgccgag agttgtgatt ctttctttta tcacattgat 241 tggtgtttgt tttctctacc caaatgtgaa aaaaataatt gttgatttct tgtagttttt 301 taattttatt tgcattttaa atggaaaatc ttgttctatc ttagaaagga gttaacaatg 361 ctgaagcaac agatcggcgt agtcggtatg gccgtgatgg ggcgcaacct tgcgctcaac 421 atcgaaagcc gtggttatac cgtctctatt tacaaccgtt cccgtgaaaa gacggaagaa 481 gtgattgccg aaaatccagg caagaaactg gttccttact atacggtgaa agagtttgtt 541 gaatctctgg aaacgcctcg tcgcatcctg ttaatggtga aagcaggtgc aggcacggat 601 gctgctattg attccctcaa gccgtacctc gataaaggtg acatcatcat tgatggtggt 661 aacaccttct tccaggacac cattcgtcgt aaccgtgagc tttcttcaga aggctttaac 721 ttcatcggta ccggtgtttc cggcggtgaa gagggggcgc tgaaagggcc gtccatcatg 781 cctggtggcc agaaagaagc ctatgaactg gttgcaccga tcctgaccaa aatcgccgca 841 gtagctgaag acggggagcc atgcgttacc tatattggtg ccgatggtgc aggtcactat 901 gtgaagatgg ttcacaacgg tattgaatac ggcgatatgc agctgattgc tgaagcctat 961 tctctgctta aaggtggcct gaacctcacc aacgaagaac tggcacagac ctttaccgag 1021 tggaataacg gtgaactgag tagctacctg atcgacatca ccaaagacat cttcaccaaa 1081 aaagatgaag acggtaacta cctggttgat gtgatcctgg atgaagcggc taacaaaggt 1141 accggtaaat ggaccagcca gagcgcgctg gatctcggcg aaccgctgtc gctgattacc 1201 gagtctgtgt ttgcacgtta tatctcttct ctgaaagagc agcgtgttgc cgcatctaaa 1261 gttctctcag gcccgcaagc gcagccagct ggcgacaaag gtgagttcat tgaaaaagtt 1321 cgtcgtgctc tgtatctagg caaaatcgtt tcttacgctc agggtttctc tcagctgcgc 1381 gcagcgtctg aagagtacaa ctgggatctg aactacggcg aaatcgcgaa gattttccgt 1441 gctggctgca tcatccgtgc gcagttcctg cagaaaatca ccgatgcata tgccgaaaat 1501 ccgcagatcg ctaacctgct gctggccccg tacttcaagc aaattgccga tgactaccag 1561 caggcgctgc gcgatgtcgt tgcttatgca gtacagaacg gtatcccggt tccgaccttc 1621 gccgctgcgg ttgcctatta cgatagctac cgtgccgctg ttctgcctgc gaacctgatc 1681 caggcacagc gtgactattt cggtgcacat acttataagc gcattgataa agaaggtgtg 1741 ttccatactg aatggctgga ttaatctgat ttaaccaaca taaaattagg cccggcgtat 1801 attgcaccgg gctttttttt gccatttatc ttatagacta aatttcattg cttaatatta 1861 acttaataaa tatcagcta //
GenBank-Updates@genbank.bio.net (04/24/91)
LOCUS ECONDGM 1747 bp ds-DNA BCT 24-APR-1991 DEFINITION E.coli (strain ECOR68) 6-phosphogluconate dehydrogenase (gnd) gene, complete cds. ACCESSION M64330 KEYWORDS 6-phosphogluconate dehydrogenase; gnd gene. SOURCE E.coli (strain ECOR68, individual_isolate RM224H) DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Dykhuizen,D.E. and Green,L. TITLE Recombination in Escherichia coli and the biological species definition JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers mRNA 172..1653 /product="6-phosphogluconate dehydrogenase" /gene="gnd" RBS 211..215 /gene="gnd" CDS 222..1628 /EC_number="1.1.1.44" /product="6-phosphogluconate dehydrogenase" /gene="gnd" /codon_start=222 terminator 1654..1683 /note="factor independent terminator" /gene="gnd" BASE COUNT 450 a 417 c 419 g 461 t ORIGIN 44 min. on K-12 map. 1 caggagatat acatagtgtc aaatgcttgt caccaaaagc ccttatgttg gagataaagg 61 aggggccatt tgacccactg aaagctaagg ctttttctaa gtggttataa agcgatatac 121 caccgtttat tcttctatct tattctatac atgctgggtt accatcttag cttcttcaag 181 ccgcgtaacc ccgcggtgac cccccctgac aggagtaaac aatgtcaaag caacagatcg 241 gcgtcgtcgg tatggcagtg atgggacgca accttgcgct caacatcgaa agccgtggtt 301 ataccgtctc tattttcaac cgttcccgtg agaagacgga agaagtgatt gccgaaaatc 361 caggcaagaa actggttcct tactatacgg tgaaagagtt tgttgaatct ctggaaacgc 421 ctcgtcgcat cctgttaatg gtgaaagcag gtgcaggcac ggatgctgct attgattccc 481 tcaagccata cctcgataaa ggtgacatca tcattgatgg tggtaatacc ttcttccagg 541 acaccattcg tcgtaaccgc gagctttctg ccgaaggctt taacttcatt ggtaccggtg 601 tttccggtgg tgaagaaggg gcgctgaaag gcccttccat tatgcctggt gggcagaaag 661 aagcctatga attggttgcg ccgatcctga ccaaaatcgc cgccgttgct gaagacggcg 721 agccatgcgt tacctatatt ggtgccgatg gtgctggtca ctatgtgaag atggttcata 781 acggtattga atacggcgat atgcagctga ttgctgaagc ctattcactg cttaaaggtg 841 gcctgagcct caccaacgaa gaactggctc agacctttac cgaatggaat aacggtgaac 901 taagcagcta cctgatcgac atcaccaaag atatcttcac caaaaaagat gaagacggta 961 actacctggt tgatgtgatt ttggatgaag cagcaaacaa aggtacaggc aaatggacca 1021 gccagagtgc gctagatctc ggcgaaccgc tgtcgctgat taccgagtct gtgtttgcac 1081 gttatatctc ttctctgaaa gatcagcgtg ttgccgcatc taaagttctc tctggcccgc 1141 aaggacagcc agcaggcgac aaggctgagt tcatcgaaaa agttcgccgt gcgctgtatc 1201 ttggcaaaat cgtttcttac gctcagggct tctctcagct gcgtgctgcg tctgaagagt 1261 acaactggga tctgaactac ggcgaaatcg cgaagatttt ccgtgctggc tgcatcatcc 1321 gtgcccagtt cctgcagaaa atcaccgatg cttatgccga aaatccgcaa atcgctaacc 1381 tgttgctggc tccttacttc aagcaaattg ccgatgacta ccagcaggcg ctgcgtgatg 1441 tcgttgctta tgcagtacaa aatggtatcc cggttccgac cttcgctgct gcggttgcct 1501 attatgatag ctaccgtgcc gctgttttgc ctgcgaacct gatccaggca cagcgtgact 1561 atttcggtgc gcatacttat aagcgcattg ataaagaagg tgtgttccat accgaatggc 1621 tggattaatc tgatttaacc aacaataaat tgaaacccgg cgtatattgc gccggttttt 1681 tttgccgatt atcttataga ctaaatttca ctgcttaata ttaacttaat aaatatcagc 1741 tattctt //
GenBank-Updates@genbank.bio.net (04/24/91)
LOCUS ECONDGN 1790 bp ds-DNA BCT 24-APR-1991 DEFINITION E.coli (strain ECOR65) 6-phosphogluconate dehydrogenase (gnd) gene, complete cds. ACCESSION M64331 KEYWORDS 6-phosphogluconate dehydrogenase; gnd gene. SOURCE E.coli (strain ECOR65, individual_isolate RM202I) DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Dykhuizen,D.E. and Green,L. TITLE Recombination in Escherichia coli and the biological species definition JOURNAL Unpublished (1991) STANDARD full staff_review FEATURES Location/Qualifiers mRNA (160.196)..1654 /note="promoter and mRNA sequence." /product="6-phosphogluconate dehydrogenase" /gene="gnd" RBS 211..215 /gene="gnd" CDS 222..1628 /EC_number="1.1.1.44" /product="6-phosphogluconate dehydrogenase" /gene="gnd" /codon_start=222 terminator 1655..1687 /note="factor independent terminator" /gene="gnd" BASE COUNT 484 a 406 c 424 g 476 t ORIGIN 44 min. on K-12 map. 1 ccaatagatt ttaatcttaa atattattat tttcagcacg gaacaaaaga tgaaattaat 61 aaattaattg aaatgggtga gattacataa ttaatattgt tactaacagc atatgttatt 121 taactccatc cttataatat aaatctcaat gcttatttct tacgttatga atattcttcg 181 taattgattt taaatttgta tgccaaaaac aggagtaaac aatgtcaaag caacagatcg 241 gcgtcgtcgg tatggcagtg atggggcgca accttgcgct caacatcgaa agccgtggtt 301 ataccgtctc tattttcaac cgttcccgtg agaagacgga agaagtgatt gccgaaaatc 361 caggcaagaa actggttcct tactatacgg tgaaagagtt tgttgaatct ctggaaacgc 421 ctcgtcgcat cctgttaatg gtgaaagcag gtgcaggcac ggatgctgct attgattccc 481 tcaaaccata tctcgataaa ggtgacatca tcattgatgg cggtaagacc ttcttccagg 541 acaccattcg tcgtaaccgt gagctttctg cggaaggctt taactttatc ggtactggtg 601 tttccggtgg tgaagagggc gcactaaaag gtccttccat tatgcctggt ggccagaaag 661 aagcctatga attggttgct ccgatcctaa ccaaaatcgc cgcagtggct gaagacggcg 721 agccatgcgt tacctatatt ggtgccgatg gtgcaggtca ctatgtgaag atggttcaca 781 acggtattga atacggcgat atgcagctga ttgctgaagc ctattctctg cttaaaggtg 841 gcctgaatct caccaacgaa gaactggcgc agacctttac cgagtggaat aacggtgaac 901 tgagcagcta cctgatcgac atcaccaaag atatcttcac caaaaaagat gaagacggta 961 actacctggt ggatgtgatc ctggatgaag cggcaaacaa aggtacgggc aaatggacca 1021 gccagagcgc gctggatctc ggtgaaccac tgtcgcttat taccgagtct gtgtttgcac 1081 gttatatctc gtctctgaaa gatcagcgcg ttgccgcgtc taaagttctc tctggcccgc 1141 aagcgcagcc agctggcgac aaggctgagt tcatcgaaaa agttcgtcgt gctctgtatc 1201 tgggcaaaat cgtttcttac gcccaaggct tctctcagct gcgtgctgcg tctgaagagt 1261 acaactggga tctgaactac ggcgaaatcg cgaagatttt ccgtgctggc tgcatcatcc 1321 gtgcgcagtt cctgcagaaa atcaccgatg catatgccga aaatccgcag atcgctaacc 1381 tgctgctggc cccgtacttc aagcaaatcg ccgatgacta tcagcaggcg ctgcgtgatg 1441 tcgttgctta tgcagtacag aacggtatcc cggttcctac ctttgctgct gcggttgctt 1501 attatgacag ctaccgcgcc gctgttctgc ctgcgaacct gatccaggca cagcgtgact 1561 atttcggtgc gcatacttat aagcgcattg ataaagaagg tgtgttccat accgaatggc 1621 tggattaatc tgatttaaat cgattaatca atgcaaggcc cggagaaacc ctccgggctt 1681 ttttattata caaagcggca ggttatggcc tttttttata atttatgatt aaaaagcgat 1741 atatacagag ccgcacagca ggatcgtgcc tgacagtcat ctacatcagg //
GenBank-Updates@genbank.bio.net (05/08/91)
LOCUS ECOMIAA 1328 bp ds-DNA BCT 08-MAY-1991 DEFINITION E.coli (delta)2-isopentenyl pyrophosphate transferase (miaA) gene, complete cds, and mutator protein (mutL) gene, 3' end. ACCESSION M63655 M37459 KEYWORDS (delta)2-isopentenyl pyrophosphate transferase; miaA gene; mutL gene; mutator protein. SOURCE E.coli K-12 DNA, clone pNU127. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 1328) AUTHORS Winkler,M.E. and Connolly,D.M. TITLE Structure of Escherichia coli K-12 miaA and characterization of the mutator phenotype caused by miaA insertion mutations JOURNAL J. Bacteriol. 173, 1711-1721 (1991) STANDARD full staff_entry FEATURES Location/Qualifiers CDS 1..63 /function="required for methyl-directed mismatch" /product="mutator protein" /gene="mutL" /codon_start=1 /partial CDS 56..1006 /product="(delta)2-isopentenyl pyrophosphate transferase" /gene="miaA" /codon_start=56 CDS 1093..1328 /note="ORF" /codon_start=1093 /partial BASE COUNT 317 a 297 c 382 g 332 t ORIGIN 95 min. on K-12 map. 1 ccgggtggtc tgttacaatc tgttgattta catccggcga taaaagccct gaaagatgag 61 tgatatcagt aaggcgagcc tgcctaaggc gatttttttg atggggccga cggcctccgg 121 taaaacggcg ttagccattg agctgcgtaa aattttacca gtagagttga taagcgttga 181 ttctgccctt atttacaaag ggatggatat cgggacggcg aagccgaacg ctgaagagtt 241 actcgccgcg ccgcaccgat tgctggatat tcgcgatccg tcgcaggctt actcggctgc 301 tgattttcgc cgcgatgcgc tggcggaaat ggccgatatc accgcggcgg ggcggatccc 361 actgttagtg ggcggtacga tgttgtattt caaggcattg ctggaagggt tgtcgccgct 421 accgtcggca gacccggaag tacgggccag aattgagcaa caggcggcag agcaaggttg 481 ggagtcattg catcgtcaac ttcaggaggt agatccggtt gcggcagcaa ggattcatcc 541 aaatgatcca caaaggcttt cccgggcact ggaagttttt ttcatttcgg gtaaaacttt 601 aacggaactg acgcaaacgt caggagacgc tctaccgtat caggtgcatc agttcgccat 661 cgccccggcg agccgtgaac tgctccatca acgcattgag cagcgttttc atcagatgtt 721 ggcttcaggt tttgaagcag aagtccgggc gctttttgcc cgaggagatt tgcatacgga 781 cttgccttcc attcgttgcg tgggttatcg ccagatgtgg tcttaccttg aaggcgaaat 841 ctcatacgat gaaatggttt atcgaggtgt ttgcgccacg agacagttgg cgaagcggca 901 gataacctgg ctgcgtggtt gggaaggggt tcactggctt gacagtgaaa aaccagaaca 961 ggcgcgtgac gaagtattac aggttgttgg tgctatcgca ggctgaatgt gtacaattga 1021 gacgtatcgt gcgcaatttt ttcaggaatc gaaaggttca aagtacaaat aagcatataa 1081 ggaaaagaga gaatggctaa ggggcaatct ttacaagatc cgttcctgaa cgcactgcgt 1141 cgggaacgtg ttccagtttc tatttatttg gtgaatggta ttaagctgca agggcaaatc 1201 gagtcttttg atcagttcgt gatcctgttg aaaaacacgg tcagccagat ggtttacaag 1261 cacgcgattt ctactgttgt cccgtctcgc ccggtttctc atcacagaac aacgccggtg 1321 gcggtacc //
GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS ECOFAEDEF 902 bp ds-DNA BCT 25-MAY-1991 DEFINITION E.coli (plasmid pFM205) faeE and faeF genes ACCESSION X56003 KEYWORDS chaperonin-like protein; faeE gene; faeF gene. SOURCE Escherichia coli DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (bases 1 to 902) AUTHORS Oudega,B. JOURNAL Unpublished (1990) STANDARD full automatic REFERENCE 2 (sites) AUTHORS Bakker,D., Vader,C.E., Roosendaal,B., Stegehuis,F., Mooi,F.R., Oudega,B. and de,G.F.K. TITLE Structure and function of periplasmic chaperone-like proteins involved in the biosynthesis of K88 and K99 fimbriae in enterotoxigenic Escherischia coli JOURNAL Unpublished (1990) STANDARD full staff_review COMMENT *source: strain=wild type; See also <X03675,X56001>; From EMBL 26 entry ECFAEDEF; dated 25-MAR-1991. FEATURES Location/Qualifiers mat_peptide <1..57 /partial /product="FaeD" /gene="faeD" prim_transcript <1..>60 /partial /gene="faeD" prim_transcript <53..>829 /gene="faeE" prim_transcript <864..>902 /partial /gene="faeF" CDS <1..60 /partial /product="FaeD" /gene="faeD" /codon_start=1 RBS 41..46 /note="faeE ribosome binding site" sig_peptide 53..109 CDS 53..829 /product="FaeE" /gene="faeE" /codon_start=53 mat_peptide 110..826 /product="FaeE" /gene="faeE" RBS 851..855 /note="faeF ribosome binding site" mat_peptide 864..>902 /partial /product="FaeF" /gene="faeF" CDS 864..>902 /partial /product="FaeF" /gene="faeF" /codon_start=864 BASE COUNT 252 a 216 c 272 g 162 t ORIGIN 1 cggatacctg cggccagact gcaggatact gagaaactac aggagattac gtgtgagtaa 61 gcgtaacgca gtaacgacgt ttttcactaa ccgggtgaca aaagcactgg gaatgactct 121 ggcgctgatg atgacctgtc agagtgcgat ggcttccctg gcagtagacc agacccgcta 181 tatctttcgc ggggacaagg atgcactgac catcacagtc accaacaatg ataaagagcg 241 tacctttggt ggtcaggcct gggtggacaa tatcgtggag aaggacaccc gtccgacctt 301 tgtggtgaca ccatccttct tcaaggtgaa gccgaatggt cagcagacac tgcgtatcat 361 catggcctcg gaccatctgc cgaaggataa agagtcggtg tactggctga acctgcagga 421 tattccgccg gctctggagg gcagcggtat tgcagtggcg ctgcgcacga agctgaaact 481 gttctaccgc ccgaaggcac tgcttgaagg ccgcaagggg gcagaagaag gcatcagcct 541 gcagagccgc ccggatggca ggaccatgct ggtgaacacc acgccgtaca tttttgcgat 601 tggcagtctg ctggacggaa acggaaagaa aattgccacg gataacggga cgacgcagaa 661 actgctgatg ttcatgccgg gggatgaagt gcaggtgaag ggaaatgtgg tgaaagtgga 721 ctccctgaac gattacggtg aactgcagac ctggacgatt aacaagaaga aaccggcagc 781 accggaagcc gcaaaagctg agaaagcaga taccgcagag cagaaataac cgccctccgg 841 aatacggaac agaggggtaa taaatgaaga aaacaatgat ggcagccgcc ctggttctga 901 gt //
GenBank-Updates@genbank.bio.net (05/25/91)
LOCUS ECOFANDEF 762 bp ds-DNA BCT 25-MAY-1991 DEFINITION E.coli (plasmid pFK99) fanD (partial) fanE and fanF (partial) genes ACCESSION X56001 KEYWORDS chaperonin-like protein; fanD gene; fanE gene; fanF gene. SOURCE Escherichia coli DNA. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Bakker,D., Vader,C.E., Roosendaal,B., Stegehuis,F., Mooi,F.R., Oudega,B. and de,G.F.K. TITLE Structure and function of periplasmic chaperone-like proteins involved in the biosynthesis of K88 and K99 fimbriae in enterotoxigenic Escherischia coli JOURNAL Unpublished (1990) STANDARD full staff_review REFERENCE 2 (bases 1 to 762) AUTHORS Oudega,B. JOURNAL Unpublished (1990) STANDARD full automatic COMMENT *source: strain=wild type isolate B41; See also <X03675,X56003>; From EMBL 26 entry ECFANDEF; dated 25-MAR-1991. FEATURES Location/Qualifiers mat_peptide <1..42 /partial /product="FanD" /gene="fanD" prim_transcript <1..>45 /partial /gene="fanD" prim_transcript <38..>724 /gene="fanE" prim_transcript <724..>762 /partial /gene="fanF" CDS <1..45 /partial /product="FanD" /gene="fanD" /codon_start=1 RBS 26..31 /note="fanE ribosome binding site" sig_peptide 38..94 /product="FanE" CDS 38..724 /product="FanE" /gene="fanE" /codon_start=38 mat_peptide 95..721 /product="FanE" /gene="fanE" RBS 713..717 /note="fanF ribosome binding site" mat_peptide 724..>762 /partial /product="FanF" /gene="fanF" CDS 724..>762 /partial /product="FanF" /gene="fanF" /codon_start=724 BASE COUNT 269 a 114 c 142 g 237 t ORIGIN 1 ctaaaagata atttatcaga aattcaggag gtaaactgtg aataaattta tttctattat 61 agctctctgt gtattcagct cttacgctaa tgccgctttt actctcaata gtacgcggta 121 tatatataat gaaggacagc aaagtgtatc tgttaacatc cataacgaaa gtgaacataa 181 atatggtggt caggtatgga ttgataatat agacaagaat ggagaggtcg tatttttttc 241 tccaagtcca atggtgttca aattgaaccc gaaacagaag caaatagttc gcattgttaa 301 tattaatgat aatttaccta aagacagaga atcgattttc tggcttaatg ttcaggagat 361 ccctccagct ccaaagggag atgggggtag tctgtcactg gcaattaata atcgagtaaa 421 attaatatat cgaccaattg ctctaaaaaa tggtcgagat gaggcagaaa ataatattaa 481 gctgattaac tcgggcacgg attcttgcct tgaaaataca acgccatatt actttgcaat 541 tagtgatgtt aaaattaatg gcaaatcaat tgatttaaat tctgatgcaa aaaataagat 601 gggagtattc tccccattct cgaaagtttg tctgggaaat gtaaatacta gtggaaacat 661 cacggtaaca gcatttaatg actatggcgt tgcaaccagc tacactgttc aaaggagtaa 721 ataatgaaaa ataaatataa tttattattt tttttatttc tt //
GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS ECOMIAA 1328 bp ds-DNA BCT 30-MAY-1991 DEFINITION E.coli (delta)2-isopentenyl pyrophosphate transferase (miaA) gene, complete cds, and mutator protein (mutL) gene, 3' end. ACCESSION M63655 M26956 M37459 KEYWORDS (delta)2-isopentenyl pyrophosphate transferase; IPP transferase; miaA gene; mutL gene; mutator protein. SOURCE E.coli K-12 DNA, clone pNU127. ORGANISM Escherichia coli Prokaryota; Bacteria; Gracilicutes; Scotobacteria; Facultatively anaerobic rods; Enterobacteriaceae. REFERENCE 1 (sites) AUTHORS Connolly,D.M. and Winkler,M.E. TITLE Genetic and physiological relationships among the miaA gene, 2-methylthio-n-6-(delta-2-isopentenyl)-adenosine tRNA modification, and spontaneous mutagenesis in Escherichia coli K-12 JOURNAL J. Bacteriol. 171, 3233-3246 (1989) STANDARD full staff_review REFERENCE 2 (bases 1 to 1328) AUTHORS Winkler,M.E. and Connolly,D.M. TITLE Structure of Escherichia coli K-12 miaA and characterization of the mutator phenotype caused by miaA insertion mutations JOURNAL J. Bacteriol. 173, 1711-1721 (1991) STANDARD full staff_entry FEATURES Location/Qualifiers CDS 1..63 /function="required for methyl-directed mismatch" /product="mutator protein" /gene="mutL" /codon_start=1 /partial CDS 56..1006 /product="(delta)2-isopentenyl pyrophosphate transferase" /gene="miaA" /codon_start=56 CDS 1093..1328 /note="ORF" /codon_start=1093 /partial BASE COUNT 317 a 297 c 382 g 332 t ORIGIN 95 min. on K-12 map. 1 ccgggtggtc tgttacaatc tgttgattta catccggcga taaaagccct gaaagatgag 61 tgatatcagt aaggcgagcc tgcctaaggc gatttttttg atggggccga cggcctccgg 121 taaaacggcg ttagccattg agctgcgtaa aattttacca gtagagttga taagcgttga 181 ttctgccctt atttacaaag ggatggatat cgggacggcg aagccgaacg ctgaagagtt 241 actcgccgcg ccgcaccgat tgctggatat tcgcgatccg tcgcaggctt actcggctgc 301 tgattttcgc cgcgatgcgc tggcggaaat ggccgatatc accgcggcgg ggcggatccc 361 actgttagtg ggcggtacga tgttgtattt caaggcattg ctggaagggt tgtcgccgct 421 accgtcggca gacccggaag tacgggccag aattgagcaa caggcggcag agcaaggttg 481 ggagtcattg catcgtcaac ttcaggaggt agatccggtt gcggcagcaa ggattcatcc 541 aaatgatcca caaaggcttt cccgggcact ggaagttttt ttcatttcgg gtaaaacttt 601 aacggaactg acgcaaacgt caggagacgc tctaccgtat caggtgcatc agttcgccat 661 cgccccggcg agccgtgaac tgctccatca acgcattgag cagcgttttc atcagatgtt 721 ggcttcaggt tttgaagcag aagtccgggc gctttttgcc cgaggagatt tgcatacgga 781 cttgccttcc attcgttgcg tgggttatcg ccagatgtgg tcttaccttg aaggcgaaat 841 ctcatacgat gaaatggttt atcgaggtgt ttgcgccacg agacagttgg cgaagcggca 901 gataacctgg ctgcgtggtt gggaaggggt tcactggctt gacagtgaaa aaccagaaca 961 ggcgcgtgac gaagtattac aggttgttgg tgctatcgca ggctgaatgt gtacaattga 1021 gacgtatcgt gcgcaatttt ttcaggaatc gaaaggttca aagtacaaat aagcatataa 1081 ggaaaagaga gaatggctaa ggggcaatct ttacaagatc cgttcctgaa cgcactgcgt 1141 cgggaacgtg ttccagtttc tatttatttg gtgaatggta ttaagctgca agggcaaatc 1201 gagtcttttg atcagttcgt gatcctgttg aaaaacacgg tcagccagat ggtttacaag 1261 cacgcgattt ctactgttgt cccgtctcgc ccggtttctc atcacagaac aacgccggtg 1321 gcggtacc //