GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS OMVNIAB 3684 bp ss-RNA VRL 30-MAY-1991
DEFINITION Ornithogalum mosaic virus genomic RNA for nuclear inclusion protein
(NIa, NIb) and coat protein.
ACCESSION D00615
KEYWORDS coat protein; nuclear inclusion protein.
SOURCE Ornithogalum mosaic virus OMV-O, cDNA to genomic RNA, clones pOM16
and pOM21.
ORGANISM Ornithogalum mosaic virus
Viridae; ss-RNA nonenveloped viruses; Rod-shaped ss-RNA viruses;
Potexvirus.
REFERENCE 1 (bases 1 to 3684)
AUTHORS Burger,J.T., Brand,R.J. and Rybicki,E.P.
TITLE The molecular cloning and nucleotide sequencing of the 3'-terminal
region of Ornithogalum mosaic virus
JOURNAL Unpublished (1990)
STANDARD full staff_entry
COMMENT These data kindly submitted in computer readable form by:
Johan T. Burger
Department of Microbiology, University of Cape Town
Private Bag, Rondebosch
South Africa 7700
Phone: (27) (21) 650 3270
Email: RYBICKI.uctvax@f4.n494.z5.fidonet.org
Fax: (27) (21) 685 5931
Telex: 5-21439 or 5-22208
FEATURES Location/Qualifiers
exon <1..1097
/note="ORF for partial nuclear inclusion protein (NIa)"
CDS join(<1..1097,1098..2651,2652..3413)
/note="ORF for partial nuclear inclusion protein (NIa)"
exon 1098..2651
/note="ORF for nuclear inclusion protein (NIb)"
exon 2652..3413
/note="ORF for coat protein"
BASE COUNT 1124 a 708 c 874 g 978 t
ORIGIN
1 ctgaatacac cattgttcga tatgttgacc cactcactgg agcgacgcaa gatgagaatc
61 ctttgatggc aatagatctg gtccaggagt atttcgctaa aattcgtagc caattagtgt
121 ctgaagaaaa actggaaact caaaacatca ttgcgaatcc aggaattcaa gcttattaca
181 tgaagaacag aggagatgct gcactaaaag ttgatttaac tccgcataat cctctgttag
241 ttacgaagac tggaaccatt gcaggttttc ctgagaatga gttcattctc cgacaaacag
301 gcaaggcagt taatgttaaa atgtcggaag tgccagtgga gaatgaactt gaagaagttg
361 agcatgaagg gaagaacttg aatagaggac ttcgagacta caacgtggtt tcaaatgtgg
421 tgtgccgcct tacaaatgaa tccgatggcc actcggcctc gctctttggt ttgggttatg
481 gtggatacat catcacgaac agacacctgt tcaagaacaa caacggtact ctcaaagttc
541 aatcacaaca tggggacttc attgttaaaa acacaacaca actcaaaatg gtgccagttg
601 gaaagacaga tatcttaata attcgtatgc caaaggattt tccagtcctt ccccagaaac
661 ttcgatttcg agctcctgca aacgaggaca aagtctgtct aatagcttcg aattttcaag
721 agagatacgt ttctagtctc gtgtctgaga caagttccgt atacccagtt ggcaacggag
781 agttttggca gcattggata tcaacgaaag acggacattg tgggctgcca ttaacctcta
841 cgaaggacgg attcattgtt ggaattcaca gtttgtcaac aattacgaat tcaaagaact
901 ttttcgcctc aataccagca aattttgaag agcagtacct tgcaaagctg gaccagcaag
961 attggactgc taattggaag tacaatccaa atgaagtgag ttggaatggt ttacgattac
1021 aggaaaataa accagggaga atcttccaag cagtcaagga ggtatcagcc ctgttttctg
1081 acgctgttta cgaacaaggg caggaagtgg gatggctttt ccgagaactc aaagataatc
1141 ttaaagcggt ggccgtgctt ccaaatcaat tggtcacgaa acatgttgtg aaaggtcctt
1201 gtcagtgttt cattcaatat cttaacgaat cgccagaagc ttctgcattc tttaagccac
1261 tcatgggcca atacgggaaa agtattctaa gcaaagaagc gttcgtcaag gatattatga
1321 aatacagtaa accaattgtt cttggagagg tagactttat aaaattcgag gaagggtaca
1381 acaacgtgct cagaatgttt catgatattg gttttgagaa atgtgagtac gttacagaca
1441 gcatggaagt gtacaagaat ctcaatttga aagcggcagt tggggcaatg tacacaggca
1501 agaagcaaca gtactttgaa ggaatgagtg aggacgaaat tcaccagctg gttattgcca
1561 gttgcttccg actttggtct ggtaagtttg gagtctggaa tgggtcactc aaagccgaac
1621 tacgaccatt agagaaagtg caagcttgca aaacgcgaac atttacagcc gcgccgctgg
1681 acacgttact tggagcaaag gtttgtgttg atgattttaa cgctcaattt tatgacaaac
1741 acttaacggc accatggaca gtgggtatct gcaaatacta caaaggttgg gacactttca
1801 tgaacaaact tccagaaggt tggttatatt gcgatgctga cggctcacag ttcgatagct
1861 ctttaacacc tttccttatt aatagtgttt tgagacttcg gttggaattt atggaggatt
1921 gggatatagg agcacgcatg ctgtcaaatc tttatactga aataatttat acacccatag
1981 cgacacctga tggcacagtc gtgaagaagt ttcgtggtaa caatagcggg caaccatcca
2041 ccgttgttga caatacattg atggttgttt tggctatgaa ctatgcgttg gctaaacttt
2101 caataccata tgaagagatg gattcacgta tacgctattt tgcaaatggt gacgatcttc
2161 tggttgcagt tgagcctacc aaaggaggcg aaattcttga ctctctccaa gcctcttttt
2221 ctgagttggg gctcatttac gacttcaacg atcgaacttt tgacaaaacc caacttagtt
2281 tcatgtccca tcaagctttg tgggatggtg atatgtttat cccgaagatc aagcaagaac
2341 gtgtggtttc aatcttagag tgggatcgga gcacgcaacc tgaacaccga attgaagctg
2401 tctgtgcagc tatgattgaa gcgtggggtt atcctgaact actccaagag attagaaagt
2461 tttatgcatt catggtgact caagaaccgt atagtgcaat acacgcacaa ggcaaaacga
2521 gatatatatc tgagcgtgca cttgttacac tatacaaaga cgaaaaggtt gtgctaagtg
2581 acattggacc ttacatccag aagctggccg agatgagcct gggatgtgtc gatgaagtgg
2641 ttatgcatca agcagattct atggatgcag gaggatcgag cagaccacca gcgccgttgg
2701 tgagacaaca agatcaagat gttaacgttg gaacgttttc tgttgcgcga gtgaaggcgt
2761 tgagcgataa aatgatgtta cccaaggtgc gcggtaaaac ggtgcttaat ttacagcatc
2821 tggtgcagta caaccctgag caaactgaaa tctcaaacac tcgtgccaca cgaacacagt
2881 tcaacaattg gtacgatagg gttagagata gttatggggt tacagatgac caaatggctg
2941 ttatcctaaa tggtttgatg gtgtggtgca tcgagaatgg cacttcacca aatttgaatg
3001 gtaattggac gatgatggat ggcgatgagc agatcgaata tcctttgcaa ccagtccttg
3061 agaatgctca gccaacattc agacaaatta tggcgcattt ctcaaacgca gccgaggcgt
3121 acatcgaaaa gagaaactcg gaacaaaggt acatgccaag gtacggcagc caacgaaatc
3181 tgaacgacta cagcttggcc cgctatgcat ttgactttta tgaaatgaca tcccgaaccg
3241 ccaacagggc cagggaagca catatacaaa tgaaagcggc agctcttcgg aacaccaaaa
3301 cgaagttgtt tggtttagat gggaaagtgg gtaccgagga agaggacaca gaacggcatg
3361 ttgcaagcga tgtcaatcgc aacatgcatt cactacttgg tgttaatatg tgatttagtg
3421 aaagtgaact tgactcaagc gcgagttagt ttactctgtt agcatccttt cctttgaatt
3481 atgcgaagta tcatttacct tagtgaccaa cacagtcaag tattgggttg ggtgataagg
3541 caagtgagta ttatagtgtg atttcgaact tattattgtt gtattgtact cgttagatta
3601 ggtgactgtt ctagtttgct tggcgaatta caacaggtga ctactctagc aaatattata
3661 atatctcaat agtgtgttag agac
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