GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS NEMA2C4A 5909 bp ss-mRNA INV 30-MAY-1991 DEFINITION A.suum alpha-2 (IV) collagen mRNA, complete cds. ACCESSION M67507 KEYWORDS alpha-2 (IV) collagen. SOURCE Ascaris suum () Adult Ovarian tissue cDNA to mRNA. ORGANISM Ascaris suum Eukaryota; Animalia; Metazoa; Nemata; Secernentea; Rhabditia; Ascaridida; Ascaridina; Ascaridoidea; Ascarididae. REFERENCE 1 (bases 1 to 5909) AUTHORS Pettitt,J. and Kingston,I.I. TITLE The complete primary structure of a nematode alpha 2(IV) collagen and the partial structural organization of its gene JOURNAL J. Biol. Chem. (1991) In press STANDARD full automatic FEATURES Location/Qualifiers 5'UTR 1..162 CDS 163..5451 /gene="alpha-2 (IV) collagen" /codon_start=163 sig_peptide 163..240 /codon_start=163 misc_feature 241..640 /function="'7S domain'" misc_signal 538..546 /function="'gylcosylation site'" misc_feature 641..4749 /function="'triple-helical region'" misc_feature 4750..5451 /function="'NC1 domain'" 3'UTR 5452..5909 polyA_signal 5856..5861 BASE COUNT 1418 a 1528 c 1821 g 1142 t ORIGIN 1 tgctgcttgc ttctagatcg gcggcaagca ccgcttcgtt taaaggcgag aagcatcgac 61 cactcagagc agaagtttgt gcggcacgcc cacagcgcag ttagctcctc gactgactgc 121 acttcaggct gaccgtgtgc tgctctgagc cgcctcgtca gcatgagttc gcggctcaga 181 ataccgttat ggctattatt acccacaact gccctcgttt attttgttac gacagttagt 241 acgcaaataa catgtcgaga ttgcactaat agaggatgct tctgcgttgg cgagaaagga 301 agtatgggaa ttcccggtcc tcaaggccct cctggtgcac aaggcatccg cggattccca 361 ggtcccgagg gccttccagg acctaaaggc cagaaaggat cccagggacc acctggacca 421 caaggaatca aaggagaccg gggaataatt ggtgtgcctg gttttcctgg taatgatgga 481 gcgaatggac gtcccggaga gcctgggccg cccggtgccc caggatggga tggttgcaac 541 ggaacggatg gtgcgcccgg tgtacctggt ttgcctggac cacctggaat gccaggattt 601 cccggccctc caggtgttcc cggaatgaaa ggagaaccgg ctattggata tgcaggagct 661 cctggagaga agggtgacgc tggtatgcct ggtatgcccg gtttgcctgg cccgcccgga 721 agagatggat ttcccggaga gaaaggcgac cgaggagacg ttggacaagc cggacctcga 781 ggaccaccag gtgaagctgg accacccgga aatccaggta tcggaagtat tggaccgaaa 841 ggagaccccg gagagcaagg acctcgcggt ccacaaggtc cacctggccc agttccatca 901 actggcgcca aaggcactat cattggtcca gagggtgccc ctggaatgaa gggagaaaag 961 ggcgatccgg gagaagcagg tccaagagga ttccctggga caccaggagt ggctgggcag 1021 ccaggacttc ctggaatgaa aggagaaaag ggtctttcgg gacctgccgg gccaaggggg 1081 aaagaaggac ggcctggttt accgggtcca ccaggattta aaggcgatcg tggtctcgat 1141 ggactacccg gtgtgcctgg tttgcctggt caaaaaggtg aggctggatt cccaggaaga 1201 gatggagcaa aaggagcgag aggaccgcca ggaccaccgg gaggtggaga gttttctgat 1261 gggccaccgg gacctcctgg actgcctgga cgtgagggac aacccggtcc gccaggagca 1321 gatggatatc caggcccacc tggaccgcag ggaccgcaag gtctgccggg tggaccaggt 1381 cttcctggac ttcctggtct tgaaggtttg ccgggaccga aaggagaaaa aggtgattct 1441 ggaatccccg gtgcccctgg tgttcaagga cctcctggac tagctggacc gcctggcgca 1501 aaaggtgaac ccggaccacg aggtgtagat ggacaaagta ttcctggtct gccaggaaag 1561 gatggaaggc ccggactgga cggtctcccc ggaagaaaag gagaaatggg actgcctggc 1621 gtacgaggcc cacccggaga ctccttgaat ggacttcctg gaccacctgg accacgcggt 1681 cctcaaggtc ccaaaggtta tgatggacgc gacggcgctc ccggtctacc aggtattcca 1741 ggccctaaag gcgatcgtgg aggaacatgc gcgttttgcg cccatggagc aaagggagaa 1801 aaaggtgacg ctggatatgc tggtttgccc gggcctcagg gtgagcgcgg cctgccaggt 1861 attcccggag caactggtgc gccaggtgac gatggacttc ctggagcgcc tggacgtccc 1921 ggtcccccag gcccacctgg acaagacggc ttaccaggcc ttcctgggca aaaaggagaa 1981 ccaacacagc tcacccttcg gcctggccct ccagggtacc ctggacaaaa gggtgaaacc 2041 ggcttccctg gaccgcgcgg acaagaagga ttacctggaa aacctggaat tgttggtgcg 2101 cccggattgc ctgggccacc gggaccaaag ggcgagccgg gactaactgg tttgcccgaa 2161 aaaccaggaa aggacggaat ccccggcctg ccgggcttga aaggagaacc tggatatggg 2221 caaccgggaa tgcccggttt gcctggaatg aaaggagacg ctggcttacc tggattgccc 2281 ggtttgcctg gtgcagtggg acctatgggg ccgccagtcc ctgagagtca gctaaggcca 2341 gggccgccag gaaaggatgg attgccaggc ttgccagggc ccaagggcga agctggattc 2401 cctggggcac ctggtttgca aggcccagcc ggattgcctg gattgcctgg aatgaaagga 2461 aatccaggcc taccaggagc tccgggtctc gctggacttc ctggaatacc tggagaaaaa 2521 gggatcgcag gaaagcctgg gcttcctggg cttactggag ctaaaggaga agctggatat 2581 cctggacagc cgggtctacc tggtccgaag ggagaaccag ggccatcaac aactggacca 2641 cccggacctc caggattccc tggacttaaa ggaaaggacg gaattcccgg tgccccagga 2701 ttgcctggtc tcgaaggaca gcgcggttta ccaggagtcc caggacaaaa gggagagatt 2761 ggccttccag ggcttgctgg tgcacctggt ttcccaggag ctaaaggaga gcctggatta 2821 cctggcctgc caggcaaaga gggaccgcaa ggaccaccag gacaaccggg agcgccaggt 2881 ttccctggtc aaaaaggtga tgaaggtctc cctggtctgc cgggagtttc tggaatgaaa 2941 ggcgatacag gtctcccagg tgttcctggg cttgctggac cccccggaca accaggattt 3001 ccaggacaga aaggacagcc agggttccct ggagttgccg gagctaaagg tgaagctggc 3061 ttgcctggat tacctggcgc acctggtcaa aagggagaac aaggattggc agggcttcct 3121 ggcataccag gaatgaaagg agcccctggg atcccaggag cgccaggtca agatggtctt 3181 cctggtttgc cgggagtgaa aggagatcga ggatttaacg gactgccggg tgagaaggga 3241 gagccgggtc cagcagcacg agatggcgaa aaaggagagc caggcttgcc tggccaaccg 3301 ggtcttcgcg gaccacaagg gcctcctggt ctccctggtt tgcctggatt gaaaggagat 3361 gagggacaac ccggatacgg agcaccaggc ttgatgggtg agaagggtct cccgggtctg 3421 cctgggaaac ctgggcgacc aggcgctcca ggaccgaaag gactcgatgg tgcgccaggc 3481 tttcccggcc ttaagggtga agcgggtttg cctggagcac ccggattacc cgggcaagat 3541 ggactaccgg gactgcctgg tcagaaaggt gaaagtggat tccctggcca acctggcctt 3601 gttgggcctc caggtctgcc aggtaagatg ggcgctcccg gcattcgtgg agagaaagga 3661 gacgctggac tgcctggact tcctggtgaa cgtggtcttg atggtctccc aggccagaaa 3721 ggagaagcag gcttccctgg ggctcccggt ctccctgggc ctgttgggcc taagggcagt 3781 gctggtgcac ctggtttccc cggtttgaaa ggtgaacctg gccttccagg tctagaagga 3841 caacccggac cacgtggaat gaaaggagaa gctggattac ccggtgctcc tggaagagac 3901 ggtctgccgg gcttacctgg catgaaggga gaagcaggac ttcctggcct gccagggcaa 3961 ccaggaaaat cgatcactgg tccgaaaggt aacgctgggc tccccggact gccaggaaaa 4021 gatggcctgc ctggcttacc aggtcttaaa ggtgaacctg gaaagccagg atatgcaggc 4081 gcagctggaa taaaaggaga acctggactg cctggaattc caggcgcgaa aggtgaacct 4141 ggtttatcag gcataccagg caagcgagga aacgatggaa taccaggaaa accaggcccc 4201 gcaggactac caggcctccc aggaatgaag ggtgaaagcg gcttgccagg accgcaaggg 4261 ccagctggac tgcccggttt gcctggtctc aaaggagaac caggtttacc tggtttccca 4321 ggacagaaag gagaaactgg attccctgga caacctggaa tccctggcct cccgggcatg 4381 aagggtgact ctggttaccc tggagcacca ggaagagatg gagcacctgg caaacaagga 4441 gaaccaggac cgatgggacc tccaggtgca cagccaattg ttcagagagg tgagaaaggt 4501 gagatgggac cgatgggcgc gccaggtatt cgaggcgaga agggattgcc tggtcttgac 4561 ggccttccag gaccaagcgg tccacctgga tttgcgggcg ctaaaggccg ggacggcttc 4621 cctggacagc cgggtatgcc aggagagaaa ggtgcgccag ggcttcctgg atttccgggc 4681 attgaaggca tccctggccc accaggtctc ccaggaccta gtggaccacc aggaccaccg 4741 ggtccatctt acaaggatgg attcctgctt gtgaagcaca gtcagacttc agaagtacca 4801 caatgtccgc cgggaatggt gaaactttgg gatggctact cattgcttta catcgaagga 4861 aacgagaaat ctcacaacca ggatctcgga cacgcgggtt cgtgcttgtc gcgattctcg 4921 acaatgccat tcctattctg tgacgtgaac aacgtgtgca attatgcatc tcgcaacgac 4981 aaatcctatt ggttgtcaac aacggcgccc attccaatga tgcctgtcag tgagggtggc 5041 attgaaccat acatctcaag atgcgcagta tgcgaagcgc cagccaatgt aatcgccgtc 5101 cattcgcaga cgattcagat cccgaactgc cccaacggat ggaattctct ttggattggt 5161 tattcgttcg cgatgcacac gggtgctggc gcagaaggag gaggacagtc gctcagttca 5221 cctggatcat gtctagaaga cttccgcgct actccgttca tcgaatgcaa tggcgcacgt 5281 ggtacctgtc attacttcgc caataaattc agtttctggc tgacgacaat tgaggatgac 5341 caacaattca ggattccgga aagtgagacg ctgaaagcag gtagcttacg cacacgggtt 5401 tcgcgatgcc aggtctgcat cagatcacca gacgtgcaac cgtatcgagg atgacgccta 5461 tccactttgc acttcagcct atctatgagc gtatttagct gctacggcaa cgttgaattt 5521 ttcttttttt ttgctaaaac tgccataaca actaaactca tattgaaatt attcgttcgc 5581 ctaaggggtt tgcttgctgc agttgtctcc cctgtttcta tttttttctt tttttttgta 5641 tagaagttaa gcctagaatg ggcagcaaac agccgcaaag gcacttcgat acgtgccaaa 5701 atggagcact ttgttaagaa actgcccggc aacgctgtct cattggcgat tcatttcctt 5761 cgccgaaact ccttgtgata atagcaactg cctgttggtg ctcgcctctc tttcgtgcat 5821 tttgttctcc ttcaatttct tacataaagt gtttcaataa agtttacttt aaaaaaaaaa 5881 aaaaaaaaaa aaaaaaaaaa aaaaaaaaa //