GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS BCP1 4877 bp ss-DNA circular PHG 30-MAY-1991
DEFINITION Bacteriophage Chp1 genome, complete sequence.
ACCESSION D00624
KEYWORDS VP1; VP2 protein; VP3 protein; complete sequence;
structural protein.
SOURCE Bacteriophage Chp1 genome DNA.
ORGANISM Bacteriophage Chp1
Viridae; ss-DNA nonenveloped viruses; Microviridae;
Chlamydiavirinae.
REFERENCE 1 (bases 1 to 4877)
AUTHORS Storey,C.C., Lusher,M. and Richmond,S.J.
TITLE Analysis of the complete nucleotide sequence of Chp1, a phage which
infects avian Chlamydia psittaci
JOURNAL J. Gen. Virol. 70, 3381-3390 (1989)
STANDARD full staff_entry
COMMENT The N-terminal amino acid sequences of the three structural
proteins VP1,VP2 and VP3 were determined and it was found that they
were encoded by ORFs 1, 2 and 3 respectively.
FEATURES Location/Qualifiers
CDS join(4460..4877,1..1373)
/note="ORF 1 (VP1)"
misc_binding join(4518..4877,1..4162)
/note="ribosome-binding site (putative)"
repeat_region join(1386..1434,1448..1492)
/note="hairpin-like structure h1"
repeat_region join(1500..1506,1514..1520)
/note="hairpin-like structure h2"
repeat_region join(2334..2339,2345..2350)
/note="hairpin-like structure h3"
repeat_region join(2946..2954,2963..2972)
/note="hairpin-like structure h4"
exon 1..1373
/note="ORF 1 (VP1)"
misc_binding 1079..1081
/note="ribosome-binding site (putative)"
CDS 1087..1182
/note="ORF 7"
repeat_region 1386..1434
/note="hairpin-like structure h1"
repeat_region 1448..1492
/note="hairpin-like structure h1"
repeat_region 1500..1506
/note="hairpin-like structure h2"
misc_binding 1510..1513
/note="ribosome-binding site (putative)"
repeat_region 1514..1520
/note="hairpin-like structure h2"
CDS 1518..2309
/note="ORF 2 (VP2)"
misc_binding 1776..1778
/note="ribosome-binding site (putative)"
CDS 1782..2309
/note="ORF 2a"
misc_binding 1792..1796
/note="ribosome-binding site (putative)"
CDS 1800..2309
/note="ORF 2b"
misc_binding 2064..2067
/note="ribosome-binding site (putative)"
CDS 2071..2319
/note="ORF 6"
misc_binding 2299..2302
/note="ribosome-binding site (putative)"
CDS 2309..2746
/note="ORF 3 (VP3)"
repeat_region 2334..2339
/note="hairpin-like structure h3"
repeat_region 2345..2350
/note="hairpin-like structure h3"
misc_binding 2810..2813
/note="ribosome-binding site (putative)"
CDS 2823..2933
/note="ORF 8"
repeat_region 2946..2954
/note="hairpin-like structure h4"
misc_binding 2946..2950
/note="ribosome-binding site (putative)"
CDS 2960..4159
/note="ORF 4"
repeat_region 2963..2972
/note="hairpin-like structure h4"
misc_binding 3532..3535
/note="ribosome-binding site (putative)"
CDS 3539..4159
/note="ORF 4a"
CDS 4168..4458
/note="ORF 5"
misc_binding 4271..4273
/note="ribosome-binding site (putative)"
CDS 4282..4458
/note="ORF 5a"
misc_binding 4450..4454
/note="ribosome-binding site (putative)"
exon 4460..4877
/note="ORF 1 (VP1)"
BASE COUNT 1305 a 682 c 1098 g 1792 t
ORIGIN 2 bp upstream of AccI site.
1 gtctacctac taaagttgca aattatcggc atcaagtttt gccattaaga gcatataatt
61 tgatatttaa tgagtattat cgtgatgaga atcttcagga gtctttacct gtttggacag
121 gagatgctga tcctaaggtt gatccgacta ctggagaaga atctcaagag gatgatgcag
181 ttccttatgt atataagtta atgcgtcgca ataagcgata tgattatttt acttctgctc
241 ttcctggttt gcagaaaggt ccttctgttg gaataggtat tacaggtgga gattcaggac
301 gtcttccagt tcatggttta gcgattagat cttatttgga tgattcttct gatgatcagt
361 ttagttttgg tgtttcttat gtaaacgctt cacagaaatg gtttactgca gatggtcgtt
421 tgacttctgg aatgggtagt gttcctgttg gtacaactgg taattttcct attgataatg
481 ttgtgtatcc atcttatttt ggtacgactg ttgcccaaac tggtagtcca tcttcttctt
541 ctactccgcc ttttgttaag ggtgattttc ctgtttatgt tgatttagcg gcttcatctt
601 cagttacgat taattcgctt cgtaatgcga ttactttgca acagtggttt gagaagagtg
661 ctcgttatgg aagtagatat gttgaatctg ttcaaggtca ttttggcgtt catcttggtg
721 attatcgtgc tcagcgacca atctatttag gtggatctaa gtcttatgtt tctgttaatc
781 ctgtagtaca gaattcatct acagattcag tttctcctca aggaaatctt tctgcttatg
841 cattatctac agatactaaa catttgttta cgaagtcttt tgttgagcat ggttttgtta
901 taggtcttct ttcagctaca gcggatttaa cttatcagca aggtttagag cgtcagtggt
961 caagatttag tcgttatgat tattattggc ctacttttgc tcatttggga gagcagcctg
1021 tttataataa agagatttat tgccaatcag atactgttat ggatcctagt ggttctgcgg
1081 ttaatgatgt gccttttggt tatcaagagc gttatgctga gtatcgttat aagccttcga
1141 aggttactgg attatttaga tctaacgcta caggtactct agattcttgg catttgtctc
1201 agaattttgc gaatttacct actttgaatg agacttttat tcagagtaat acgccgatag
1261 atagagcgtt agcagttcct gatcagcctg attttatttg tgacttttac tttaattatc
1321 gttgtattag gcctatgccg gtgtattctg ttccaggttt aagaaggatt taatatccca
1381 acgagcgtga cccagtaaat gcgagaagag cagcgtaaga aaatattagt caatgtaacg
1441 tagtggaatt gattaatact tttctgaagc gaaaattttg cattgggtca cgtaagtgac
1501 ataattttag aggaattatg agtttcgcgg agaatgttgg tagattcata ggaaattctg
1561 tgaattctgt cggaagtgtt ataggagatg gtcttaaagg ttttaattcc actcagtcta
1621 tttccagtgc taagcaggca aaccttctta ataatttgcc tttgccttct ttagataatg
1681 ttttaaatat tggaatgttt ggcggtcttg cttcaggcct tctttcttat agagctgcta
1741 aaaagcaaaa taaggttatg caggatattg ctaataggca aatggctttt caggagcgaa
1801 tgtctagtac ggctgttcga cgtcatgtag aggacttaaa gaaggcaggt ttgaatccgc
1861 ttttagcttt aggtggatct gcttctactc ctcaaggtgc tttttattct cctgttaatc
1921 ctatggagtc aggacttaat tctgcgatat cagttgcgga taaagttttt gattatcagc
1981 gtttagctca tgctgatttt cagggtcgtt tgaattctgc tatgagtgtt gttcagttgg
2041 cttctgctgt tcaggattat aaaaggaact atggaaagtt tggtgaagtt gcatattggt
2101 ttgatcgata tgctggcaag ttgttgcctg ctatgctttt ctatttgttt agaaagcatc
2161 cagttggaag agcggtttct gctgctaatt ctggttatgc tgttgctaag ggtgctaaag
2221 gtgttaattt taagttttcg aatatgtcta gtacggctgt tcagcgtcat aattctagat
2281 ataatgtttc gaaaggatgg agaaggtaat gaagtttaga acgatttatg atgaggagcg
2341 tcctgctcct gttttggagt gtaaggatga aagtctatgt ttggcttatc aatgtactga
2401 gacgtctatt gaaaaattgg ttaagttagc gaatcagaat ccttcttatt tacatgcatt
2461 tgctggtgat cctactcgtc aacctgaata tggagagtgt ccttctcctt tggattatca
2521 agatgcttta gagattgtag ctcgtggtga agaggctttt tattctttac ctgcgaatat
2581 tcgagttaat ttttcgaatc ctatggagtt tttgtcatgg ttagaggacc ctgctaatta
2641 tgatgaagtt gagaagttag gtttattgga tcctgagaaa gttcagataa gaaaatctaa
2701 gttacaaaaa gatcaaaaag aagaggtttc ttctgaggaa aaatagcgag ggctatatcc
2761 tcttggctat atagcccgag cgacacaaaa tatataaaac cttaatgaaa ggatgtattt
2821 cgatggttcg tagaagacgt ttgagaagaa gaataagtag aagaattttt agaagaacag
2881 tagctagagt tggtagaagg cgaaggtctt ttcgtggtgg tattagattt taaggcaaaa
2941 aaaatggagt atctttttaa tgagatactc cttagactca tatctaatat ccgtttatat
3001 ccgtttaaca caaaggaaat cagattatat gtgtactaat cctattatac ctatagttca
3061 atataaagtt ccagttaaat cttcgttaga tgttgtggat tggtctaaat ttaggtctaa
3121 ctttaaggct aatctgtttt ttttcgagaa gaatgttgtt cgtcgtgctg taagtaatgt
3181 agatgaagct tttagattta ctgagcaact gaagcaagtt agttatttat ctacttttga
3241 tcttgatggt tatcatcagg tgaagcagtt ttcttttcct cttccttgta ggaaatgttc
3301 tgagtgtttg cagaagcgtt ctaaggattt agcggttcaa gctactatgg aagcgcgttc
3361 tcatgaggag aattctgttt tgattcttac ttatgataat gatcatttag gcgataatat
3421 tttagattat gatcatattc gagtttttca gaagcgtttg cgtcgttatg tggattatca
3481 ctatggcaaa aagattaagt ttttgactgt aggagaatat ggtgataaga aaggtcgtat
3541 gcattggcat atgattgttt ttggttggaa gccgaaatct gaggaacaat tagagcctta
3601 tttaggagga aagtatcgaa cggatgttcg atatcgttct agaaagctta aggaactatg
3661 gaaatttggt tatgttgatg tagatgaagc tacagatggt aatatttttt atgtagctcg
3721 ttatgtgcag aaaaagtttg ttgttggatg tgatttagat tcttctaagt ctagttctag
3781 gagagagaag aagacagctt ctcaagcttt aggtttagat tatttttttt cttatttaag
3841 gcaatttctt aagactaaga ggatagtttt aaatggtttt agatatggat ttccgcgtta
3901 ttttaaggat ttattgagga agttggtttc agaggattcg gagtttgata ctgagtatta
3961 taatgcttta aggaaaaggt tacttagtgt atgtagttat tcgatggtaa ataaatattt
4021 tacctattta gaatgcttag ttgaagtttt gccagttttg aattttcatg atttatacca
4081 gcgtgcgctt aggtatatgg atcaatctat tcttaagccg catgctagtg atcatgatgg
4141 agaatataat actacttagg agatctgatg catatgtttt attattcaat ttatgatcga
4201 aaggctcggt cttatggaga tttgatctct tttccttcag gtgagaaaga ggctgctatt
4261 cgatggttta gagatgttgt gatggattca gattctaaga atattttgca tcgatatcct
4321 gaggattttg atttttgcta tattggttat tttgataagg ataaaggacg tttttatcct
4381 gtggatgctg ggatagttac gattattaat gcaggagagt tttttttaga ttctgagtat
4441 agacaagaag aggtttaata tggctaaagg acgaaagctt ccgtcggtta tgaagaatcg
4501 tttttcagag gtaccgacag ctacgattag gcgttcaagt tttgatcggt ctcacggtta
4561 taagactacg tttgatatgg attatttagt tccatttttt gttgatgaag ttcttcctgg
4621 agatactttt tctttatcgg agacgcatct ttgtcgtttg actacgttag ttcaaccgat
4681 tatggataat attcagttaa ctactcagtt tttctttgtt cccaatcgtt tgctttggga
4741 taattgggaa tcgtttatta caggtggtga tgagcctgta gcttggacaa gcactaatcc
4801 tgctaatgag tattttgttc ctcaagtaac ttctcctgat ggaggttacg cagagaattc
4861 tatttatgac tattttg
//