GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS CHKRDPSN 4285 bp ds-DNA VRT 30-MAY-1991
DEFINITION Chicken rhodopsin gene.
ACCESSION D00702
KEYWORDS rhodopsin.
SOURCE Chicken adult whole blood cell, genomic DNA, clone gAR131.
ORGANISM Gallus gallus
Eukaryota; Animalia; Metazoa; Chordata; Vertebrata; Aves;
Neornithes; Neognathae; Galliformes; Phasianidae.
REFERENCE 1 (bases 1 to 1052; 1887 to 2055; 2131 to 2296; 2427 to 2666; 3543
to 4285)
AUTHORS Takao,M., Yasui,A. and Tokunaga,F.
TITLE Isolation and sequence determination of the chicken rhodopsin gene
JOURNAL Vision Res. 28, 471-480 (1988)
STANDARD full staff_review
REFERENCE 2 (bases 1 to 4285)
AUTHORS Takao,M.
JOURNAL Unpublished (1990)
STANDARD full staff_review
COMMENT These data kindly submitted in computer readable form by:
Masashi Takao
Department of Biosciences
Kitasato University, School of Hygienic Sciences
1-15-1 Kitasato, Sagamihara
Kanagawa 228
Japan
Phone: 0427-78-9406
Fax: 0427-78-9070
FEATURES Location/Qualifiers
precursor_RNA <692..>3793
/note="mRNA and introns"
CDS join(692..1052,1887..2055,2131..2296,2427..2666,
3543..3662)
/note="rhodopsin"
misc_signal 553..557
/note="put. TATA box"
exon 692..1052
/note="rhodopsin, exon 1"
misc_feature 695..697
/note="pot. N-glycosylation site"
misc_feature 734..736
/note="pot. N-glycosylation site"
intron 1053..1886
/note="intron 1"
exon 1887..2055
/note="rhodopsin, exon 2"
intron 2056..2130
/note="intron 2"
exon 2131..2296
/note="rhodopsin, exon 3"
intron 2297..2426
/note="intron 3"
exon 2427..2666
/note="rhodopsin, exon 4"
misc_feature 2616..2618
/note="put. chromophore attachment site"
intron 2667..3542
/note="intron 4"
exon 3543..3662
/note="rhodopsin, exon 5"
repeat_region 3708..3717
/note="inverted repeat 1"
repeat_region 3710..3719
/note="inverted repeat 2"
repeat_region 3726..3735
/note="inverted repeat 1"
repeat_region 3759..3768
/note="inverted repeat 2"
misc_signal 3788..3793
/note="put. polyadenylation signal"
BASE COUNT 828 a 1282 c 1255 g 920 t
ORIGIN
1 tgggggttct gaaccacaaa attcattcct gtttgctttg gtcaagcaca accacaggaa
61 ggatcctgtg tgctttgtct ttctctgaca ctctttgccc attggcctgg cagtaacgtg
121 tcccatttcc catatccctc tgtgggtaaa ctgaggcatt ttgaactgat gggcgctgca
181 gcctgtgatg ggctgatggg gcaccctgtg gggcacgggg cggtgggcgt ccagccgggc
241 tgctgcgtgc aatgagtgct ttgggcccag gcagcgggcg ctcagcctgg ggcagcagca
301 cagtgtgcca gggagcgctg cgtgcaggtg gggctgccgt ccggtttggg ctcccacaca
361 agcagtgcag agcttcctgt ctgcgtatga ccatgaaccg tggtctccaa caatgacagt
421 gtgggccaga aacaggtgtc accttaatac ccacccagaa aagccaatta cccctggatg
481 attatgatta ataactctct aagccctaat cgcgctgaca ccgatgcccg gggcttactg
541 cagggggcac tttataaggg acgccctaca gctgcttctc tgcggggcga cagcagaggc
601 tgggcagcgg tgcgagccca actgcagggc gattccccca tacaaaaacc gacgctgagt
661 gcgactgaga ggcgccccac aaaccgcagc catgaacggg acggaaggcc aagacttcta
721 cgtgcccatg tccaacaaga ccggggtggt gcggagcccc ttcgagtacc cccagtacta
781 cctggctgag ccctggaagt tctcggcgct ggctgcctac atgttcatgc tgatcctgct
841 cggcttcccc gtcaacttcc tcacgctgta cgtcaccatc cagcacaaga aactccggac
901 gcctctaaac tacatcctcc tgaacctggt ggtcgccgac ctctttatgg tctttggagg
961 cttcacgacc accatgtaca cctcgatgaa cgggtacttt gtctttggag taacagggtg
1021 ctacatcgag ggcttctttg ctacgctggg cggtgagttc tccgagtttc caaaaatctg
1081 acagaagttt ccccagattt tggtgggggg gggatgccca gctgctgctg aaagccgggt
1141 gctgcatgcc aggccctgct gctgctgcgg gctgcggtgt ctgcagcact tctgggtggg
1201 aagtgaagaa agtggcaaat ggcacttctt ttttaagcct tgttttggta gccacctgtt
1261 ccatctcctg caaaccacag cgtaaccatg aaaagtaacc aacagcagat tgtgcagctg
1321 ctggatttgc acatcccttt ggcttgcttt ctgacgggag aggtgacagt ttgttctggc
1381 attggggggc tgagagttac tgcagcgcag cgcagcccag cagagccgcc ttcactgtgc
1441 cgccttcact gtgccgtcca gccagtgatg gacagtgtaa ataagggccg tgtgtctgag
1501 aacggcctcc tccagccggc tccgctccca gccgtactgc aggcagctgt tggcagggcc
1561 gggcccccag gcacgggtga cccgagcaga acctgggggc agtgctgcag ctcagagtgg
1621 gtgcagcgct gtgtgtggga ggagggcagg atccagtggt gggtctcaaa gcagagcagc
1681 acagcggtca ccgctggggc tctggaggca tcttctgact ccttcccacc acactggtgg
1741 ggtactcgtc ctctgctccg ttctgtttct gagcacaggg tggaggttca ctgctgatgg
1801 gggtcttccc cgtgccagca atggcaggcc tttgtcctcc catcactcga ggtccccgca
1861 tctctacccc tctctccccg gtgcaggtga aatcgctctc tggtcactcg tcgtcctggc
1921 cgtggaacga tatgtggtgg tctgtaagcc catgagcaac ttccgcttcg gggagaacca
1981 cgccatcatg ggggtcgcgt tctcctggat catggccatg gcctgcgcag cccccccgct
2041 gttcggctgg tcacggtagg gagggggctg ggcatggagc gcagggtgtg ggcagctctg
2101 ccgggcactg accaccccgc gtgctcgcag gtacatcccc gagggcatgc agtgctcgtg
2161 tgggatcgac tactacacgc tgaagccgga gatcaacaac gaatcctttg tcatctacat
2221 gttcgtggtc cacttcatga tcccactggc cgtcatcttc ttctgctatg ggaacctggt
2281 ctgcactgtg aaggaggtgg gtgctgcccg gggggtgggg gctgtgccgg gctccacgcg
2341 gtgacagaag ggagcagtac ccccggccct gcgccccacg caggccaagc cctcccgatt
2401 ccatcactgc cctgctgtgc ccgcaggctg ccgcccagca gcaggagtct gccaccaccc
2461 agaaggcaga gaaggaagtg acccgcatgg tgatcatcat ggtcatcgcc ttcctcatct
2521 gctgggttcc ctacgccagc gtcgctttct acatcttcac caaccagggc tcagactttg
2581 gacccatctt catgaccatc ccggcattct ttgccaagag ctctgccatc tacaatcctg
2641 tgatctacat cgtaatgaac aaacaggtaa ctgccagctg attgcctctg tagtgtttct
2701 ctttgtagaa gctgcgggga gctcccacac ctccagcacg ccgtgagccg tgaggggatt
2761 ccagggactg cgtgctgatg tgcaggaggg tgaagtgcag ctcactgctt cacactgtgc
2821 agctctcatt gatgcagaca cccacctgag caatgtgcac gctggcccag cggagcagct
2881 gggagtgcct cccccagccc tgagcactgg gagggagact tcaccagcac agtgccctgg
2941 tgcagacacg ctggagggtt ccaagcagtt cccactacag catgtgggat ctgtacctgc
3001 gtttgctcct gctatggtag ttccttccaa atcttatgag gagcagctga gggagttggg
3061 atgttcaggc tgcacaagag ggggctcaga ggagacctca atgcactcta caacttccta
3121 aagggaggct gtgatgagga ggggtttggc ctcttctccc aggcaacaaa caggacccga
3181 ggaaatggcc acaagttgta ccagaggagg tttaggttgg acataaagaa aagctttttc
3241 tctcagagag tggtgaggcg ctggaatggc tgtccaggga ggtggtggag ttgccatccc
3301 tggcagtgtt caagaggcat ctggatgagg agctacgaga tgtggcttag tgtttgtggt
3361 agtaatggtg atggttggac tagaagatct tgtaggtcct ttccaacctt gagattctat
3421 gattcctcag tgcccatggc actgctgggc tcacttctca ccacccccag ctttgggccc
3481 agcataaagg cagcccctca gcagccccct gccctcacca cgctgcttcc tctctcttcc
3541 agttccgtaa ctgcatgatc acaaccctct gctgcggcaa gaacccgctg ggcgatgagg
3601 acacgtctgc tggaaagaca gagacctcct ccgtctccac cagccaggtg tcccctgcat
3661 aggtcccgct gcaccaacct tgcccactgc cagcgcctgc ccgcttcagc acagccctgc
3721 agggcgggct gctctcccaa ccataggaac cctgggaaca aggctgtgaa aatgtacacg
3781 ttttgtaatt aaaatgcaaa agcttagctc ctccactggc ataactttgt gcttctctct
3841 ctgtcgattc actgagagct cacacctgtt gcaccacgca ggccctgcaa agccccggca
3901 cagcagaacc gctgccacct ccctcacccc aacctgaagg cctcggtggg tcagaggctt
3961 gagcccctcc cagctccact gctgcagaca gaggctggca gccaccagca gccattgggc
4021 cggggcgggg ggctgtgctg gggcaggctg agcactgcca gatgcccact gctcagagct
4081 ccacgctcga ctctgcccca gcacctcaga agggcaccgc aacacctctg ggatgacggg
4141 tgggttttgg tgcacacgtg ccccctgtgc tgcaggggtg atggtgcaga tcccagcccc
4201 gagcaggcgg cacagcatgg tgcagctgtg tcccgctatg gctgggcgtg cttgggaagg
4261 gctcggcgcg ctctccatcc atcca
//