GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS HSE4 5880 bp ds-DNA VRL 30-MAY-1991
DEFINITION Equine herpesvirus 4 (EHV4) genome, thymidine kinase (TK) and
glycoprotein H (gH) genes.
ACCESSION D00683 D00684
KEYWORDS UL21 gene; UL24 gene; gH gene; glycoprotein; thymidine kinase.
SOURCE Equine herpesvirus 4 (strain 1942).
ORGANISM Equine herpesvirus type 4
Viridae; ds-DNA enveloped viruses; Herpesviridae;
Alphaherpesvirinae.
REFERENCE 1 (bases 2041 to 5880)
AUTHORS Nicolson,L., Cullinane,A.A. and Onions,D.E.
TITLE The nucleotide sequence of an equine herpesvirus 4 gene homologue
of the herpes simplex virus 1 glycoprotein H gene
JOURNAL J. Gen. Virol. 71, 1793-1800 (1990)
STANDARD full staff_review
REFERENCE 2 (bases 1 to 2400)
AUTHORS Nicolson,L., Cullinane,A.A. and Onions,D.E.
TITLE The nucleotide sequence of the equine herpesvirus 4 thymidine
kinase gene
JOURNAL J. Gen. Virol. 71, 1801-1805 (1990)
STANDARD full staff_review
COMMENT These data kindly submitted in computer readable form by:
Lesley Nicolson
Dept. Veterinary Pathology
University of Glasgow Vet School
Bearsden road
Glasgow G61 1QH.
Scotland
U.K.
Phone: 041-339-8855 x5601
Fax: 041-330-5733
FEATURES Location/Qualifiers
misc_signal complement(99..104)
/note="put. polyadenylation signal (UL24)"
misc_signal complement(115..120)
/note="put. polyadenylation signal (UL24)"
CDS complement(116..934)
/note="ORF1 (UL24 homologue)"
misc_signal 861..865
/note="put. TATA box (TK)"
misc_feature 887..887
/note="pot. transcription initiation site"
CDS 949..2007
/note="ORF2 (TK)"
misc_signal 2049..2054
/note="put. polyadenylation signal (TK)"
misc_signal 2127..2133
/note="put. TATA box (gH)"
misc_signal 2197..2202
/note="put. TATA box (gH)"
CDS 2225..4792
/note="ORF3 (gH)"
misc_signal 4777..4782
/note="put. polyadenylation signal(gH)"
repeat_region 4893..5315
/note="direct repeat region"
rep_origin 5395..5403
/note="put. replication origin"
rep_origin complement(5440..5448)
/note="put. replication origin"
CDS complement(5755..>5880)
/note="ORF4 (UL21 homologue)"
BASE COUNT 1459 a 1377 c 1499 g 1545 t
ORIGIN map position approx. 0.48-0.51.
1 cacatactct gccatctcgg ctactactat aaggccttta gcttcgatct tggtgtatac
61 ttgcgtgtag gcgcgctaac aaaaaagggg cagcagtctt taatgtcacg ggcttttatt
121 ttggggcaaa tagggatgcc acccaggcaa gggggtttgc gagcgatata gtcgccggtt
181 gatatcccac agcggcgtta gtggtgtttg cttgggccgt cgccgaaaac aaactcgcaa
241 cggcagcagt cgctgcaggt ttagcttgcg ttataggttg aatagaccca gtagtagttt
301 tggctctaaa agctttggaa tttgttcttc gcgtaacaca tcgccttcta gttgatctct
361 cagaaatggg aggggagtat tccgctaggc gtgatatagt gcaagatagc acagctgcgt
421 tgctatacac tacctgtggc gataaacgcg ttaccctcaa cacccgcatt cctcgttgag
481 ctacaaacac taacaccggt gctagtaaaa tttcaccgct tcccggaggc aaggttttgg
541 ctagcaacct acatgagtcg tgaagctgtc gcataccccc cttccgttgt aaatttttac
601 tagcggtgtt catatttttt gagaagcgac acgtttttag ttctattaag atgcagaccc
661 ctttggcgtc agagccatgc ccaaattgca ctgtacatac acaatctggg cgccgctgtc
721 cgaggttgac ctcaaaggct agagacacgc ccatagccgt tttaagagtt tccgctggca
781 ccaattcact aaaaagggga gcaagccgcg ctccgtacac tccattcttc ttggcgcttg
841 ccaaatcttg aaccattgcg ttatagaagc ggttgtggca ccgtataccc gctctgagtc
901 tgcttctagc ggtgagacgc tgtttacgtt tcatctccac aggcagtaat ggctgcttgc
961 gtacccccgg gagaagctcc acgaagcgcc agcggaacgc ccacccggcg gcaagtaaca
1021 atagttagaa tttacctcga tggagtttat ggcatcggta agagcacgac gggacgagtt
1081 atggcatcgg ctgctagcgg aggaagtcca actctatact ttccagagcc tatggcgtac
1141 tggcggactc tttttgaaac ggacgtaatt agtggtattt acgacaccca aaaccggaaa
1201 cagcagggaa atttggccgt tgatgacgcg gcattaataa ctgcgcatta ccaaagccgc
1261 tttaccacgc cctacctgat actccacgat cacacttgta cgttgtttgg gggaaacagc
1321 ctacagcgtg gaacacaacc ggacctgacc cttgtgtttg accgccaccc ggtcgcctct
1381 accgtatgct ttccagcagc ccgctaccta ctcggtgaca tgtcaatgtg cgcgctaatg
1441 gctatggttg ctactctacc aagagaaccc cagggtggta acattgtggt taccacccta
1501 aatgtagagg agcatatacg gagactgcgt acgcgggcta gaataggaga acaaattgac
1561 attacgctga ttgctacatt gcgaaatgtg tactttatgc tagttaatac atgtcacttt
1621 ttgcgctctg ggcgagtttg gcgcgacggt tggggtgagc tacccacttc ctgtggggct
1681 tataagcatc gcgccacaca gatggacgcc ttccaagagc gcgtttcacc ggagctgggc
1741 gacactctgt ttgccctgtt taaaactcaa gaactgctag acgatcgcgg tgtaatattg
1801 gaagttcacg cttgggcgtt ggacgcgctt atgctaaaac tgcgtaacct gaatgttttc
1861 agtgccgatt taagtggtac accgcgacaa tgtgcagctg ttgtagagtc tttgctgcca
1921 cttatgagca gcaccttatc agattttgat tccgcctctg ctttagagcg ggcggcacgc
1981 acctttaacg cggagatggg cgtctgaagc tatatgtaat gtttgttgtg ccaatgccaa
2041 aattgtgaaa taaagattca tttgccaata tccatcatag cgccttgtgt gtttcgtgtg
2101 taaacttcca gtttctagtt tggggatata taagccgttg tgctcttaaa tcatttagta
2161 cagcgcggcc gagatactcg aggtatccag tggttgtata ttgggaataa atactgctgc
2221 gattatgtca caaccgtatc taaaaatagc tatcttagtg gccgctacta ttgtgtctgc
2281 gattcccgtt tggacaacac cggtttcaac ttcaccaccc caacaaacaa aattgcacta
2341 tgtgggaaat ggtacctggg tacacaacaa tacattcaac gtaaccaggt atgacaggat
2401 aaccatggaa ccagtttata ataacaattt atcctctact accttttttg ttgctatatc
2461 ggagagaaat tttcgcacgg ttaacactcc acttggagcg tccgtatttt ggattttaaa
2521 aagcgctctt aatcctccca aacaccaacc ctgtatagct aatgtgccag aacccggtga
2581 cccacgcgga ccgtgcgtca actcaactgt gagtctattt tttaatgaca atttggagcc
2641 gtttttaatg acaaaaaatc ttttggagtt tgaagtattg cccgacaact acataaccgg
2701 atggacgttt gagcggtcta aaactgtggc tacgaaaggc aacccggttg gagtggttct
2761 ctcccctccc cgaacaagtc cggatgtaaa taacaccata agagatgatg gcacccctaa
2821 acagcacttg agcattatag acgaacatac tacgttcgtg ctcgacctgc aaaattttac
2881 aaaaacttta acttatataa gcccatttgc tgcggtgtgg ccaataacag cctttcatgc
2941 cggaattaca gtaatggggt gtgacacaac tcaggcgatt gcgtacctcg gcaatgggtt
3001 tatgggtttg caaataagct cggtaaacaa tccaccgctg gagatgattg ttgcaccaaa
3061 tgacgtccgt gctcggatag ttaaccgcct tcccccaaga cgtcgacttg agccacccgg
3121 gccatatgca ggacctatct acaaggtgta cgtactcagt gatggaaatt tttacttggg
3181 tcatggcatg agcaagattt ctagggaggt tgccgcgtac ccagaagaga gtttggacta
3241 ccgctaccac ttatcgcttg ccaaccttga tactctggct atgttggcag aactttcttc
3301 cggtaagagc aaggatgtga gctattactt gtatcgcata attgcgaggc tggccgtagc
3361 aacgttttcc cttgcagaag ttatacgcct gagtgactat atgctccttc aagaggccat
3421 cgacgtggat ataaacctcc gcctaattgt acctctagtg atgaagtacg ccgctggggg
3481 aacggcagat agctcgtaca catcctcgga cgtagctatg gaccaattcg aggtggctca
3541 agcccagatt gagaagatag tagccgatat aaatatcgaa aatgaattgc gcaaacctat
3601 gtacgagcac cgctcattat tgaaaagcgt gtacgcttat tctagaaagc cgctaccaaa
3661 cgcggtaagc tttgctaacc ggctcatcac ggctatgtat aaagaagcaa ttaaggacag
3721 aattacgtgg aactctacga tgcgagaggt gttatttttt gcggttggtg ctgctgcagg
3781 ttcgcatgtt atcctcacgg atgggccaga tctcggttta catgcccaca aagattcttc
3841 gatgtttcta tctcttaacc gcaacatact cttgttgtgt acggccatgt gtacggcgtc
3901 gcatgccgtg tccgcaggag taaaactaga ggaagttatg gctggcctta ttgccggggg
3961 tgtacaattt agcctcctag aagtatttag tccatgtatg gcgtctgctc gatttgacct
4021 ggccgaagaa gagcatgtgc tagatctact gtccgttatc ccacctcgcc tgtacaccga
4081 cttaaacact ggcttggagg acgacggaac caccatccat tcatacggac ggtctgctaa
4141 cggaatttta aactctcgaa tcgcatataa ctttgatgct gttcgtgtat ttactccaga
4201 gttggcctca tgcagcacta aactaccaaa agttttggta gtgctaccct tagcatcaaa
4261 ccgaagctac gttataactc gtactgcgcc caatataggt ttaacttact ctcttgatgg
4321 ggtaaatata gcaaagccta tagtcatcag ttacatcact tatggaaatt gtcaagtttc
4381 gagagctaca atcaggtcag tttacttgga ccatccgggc cacacccagt cgtgcgtata
4441 ttgcgggagt gtgtttatgc ggtatatggc atccggagca attatggatt tgatatacat
4501 agatgacaaa gatgtagagt tgcaactggt agcaggggaa aactcaacta ttccagcctt
4561 taacccaaag ctgtatacgc ccagcatgaa tgctctttta atgtttccaa acggaacagt
4621 aaccctaatg tctgcatttg catcctactc agcttttaaa attcccagta cttatctgtg
4681 ggcttctatt gggggtttgt tgctggctat tctgatttta tatgtaatcg ttaaaatgtt
4741 atgtggtggt gtaattaata atgactatag tttgttatta aactctgagt aaacacaaac
4801 aatgtctagt gtgttgtatt gcgtgtaaac agtatacgag tgaacattta tacgtaaaat
4861 ggttaaattt tattttcgct ataaacggga atgcggcggc gagggctgct gcggcggcga
4921 gggctgctgc ggcggcgagg gctgcggcgg cggcgagggc tgcggcggcg gcggcgaggg
4981 ctgcggcggc ggcggcgagg gctgcggcgg cggcggcgag ggctgcggcg gcggcggcga
5041 gggctgctgc ggcggcggcg agggctgctg cggcggcggc gagggctgct gcggcggcgg
5101 cgagggctgc tgcggcggcg gcgagggctg ctgcggcggc ggcgagggct gctgcggcgg
5161 cggcgagggc tgctgcggcg gcggcgaggg ctgctgcggc ggcggcgagg gctgctgctg
5221 cggcggcggc gagggctgct gctgcggcgg cggcgagggc tgctgcggcg gcggcgaggg
5281 ctgctgcggc ggcggcgagg gctgctgctg cggcgtaaat gcagctattc cacaggctcc
5341 ccgcttaaat aggaaaggtg ggcgggcggt ttactggtaa atgtagttac gtagcgttcg
5401 cacttggtta caataattat tatatattat tagcaattgg tgcgaacggg gaattggtcc
5461 aatcaaatgg tttaaaaacg gccatgtgac atacaaacca atcacaacac ctagtattga
5521 ttacttatca ataggttcca aatcaataat ttcgcctaat gcgggtttgt actacctcca
5581 gctatcttcc gttgaaaatt acaacggcat ggggcggtcg ggacaccacc atatataaat
5641 atctcgcgct tgcattgtag accgcaaact cacctttaat gtagtaaatt ttacaacatt
5701 aaaatgttat tcgccttaat aaaattacaa tacagcgatg taacttcgga gtttttatgc
5761 tctgttaaca tgcacaggta caccaccacg ctttaatctc tcgctgagta agtaatataa
5821 gtagtatgcc ccctttcggc ttaagtccaa attatcaaat gctgttatta aagacacgtt
//