GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS HSE4 5880 bp ds-DNA VRL 30-MAY-1991 DEFINITION Equine herpesvirus 4 (EHV4) genome, thymidine kinase (TK) and glycoprotein H (gH) genes. ACCESSION D00683 D00684 KEYWORDS UL21 gene; UL24 gene; gH gene; glycoprotein; thymidine kinase. SOURCE Equine herpesvirus 4 (strain 1942). ORGANISM Equine herpesvirus type 4 Viridae; ds-DNA enveloped viruses; Herpesviridae; Alphaherpesvirinae. REFERENCE 1 (bases 2041 to 5880) AUTHORS Nicolson,L., Cullinane,A.A. and Onions,D.E. TITLE The nucleotide sequence of an equine herpesvirus 4 gene homologue of the herpes simplex virus 1 glycoprotein H gene JOURNAL J. Gen. Virol. 71, 1793-1800 (1990) STANDARD full staff_review REFERENCE 2 (bases 1 to 2400) AUTHORS Nicolson,L., Cullinane,A.A. and Onions,D.E. TITLE The nucleotide sequence of the equine herpesvirus 4 thymidine kinase gene JOURNAL J. Gen. Virol. 71, 1801-1805 (1990) STANDARD full staff_review COMMENT These data kindly submitted in computer readable form by: Lesley Nicolson Dept. Veterinary Pathology University of Glasgow Vet School Bearsden road Glasgow G61 1QH. Scotland U.K. Phone: 041-339-8855 x5601 Fax: 041-330-5733 FEATURES Location/Qualifiers misc_signal complement(99..104) /note="put. polyadenylation signal (UL24)" misc_signal complement(115..120) /note="put. polyadenylation signal (UL24)" CDS complement(116..934) /note="ORF1 (UL24 homologue)" misc_signal 861..865 /note="put. TATA box (TK)" misc_feature 887..887 /note="pot. transcription initiation site" CDS 949..2007 /note="ORF2 (TK)" misc_signal 2049..2054 /note="put. polyadenylation signal (TK)" misc_signal 2127..2133 /note="put. TATA box (gH)" misc_signal 2197..2202 /note="put. TATA box (gH)" CDS 2225..4792 /note="ORF3 (gH)" misc_signal 4777..4782 /note="put. polyadenylation signal(gH)" repeat_region 4893..5315 /note="direct repeat region" rep_origin 5395..5403 /note="put. replication origin" rep_origin complement(5440..5448) /note="put. replication origin" CDS complement(5755..>5880) /note="ORF4 (UL21 homologue)" BASE COUNT 1459 a 1377 c 1499 g 1545 t ORIGIN map position approx. 0.48-0.51. 1 cacatactct gccatctcgg ctactactat aaggccttta gcttcgatct tggtgtatac 61 ttgcgtgtag gcgcgctaac aaaaaagggg cagcagtctt taatgtcacg ggcttttatt 121 ttggggcaaa tagggatgcc acccaggcaa gggggtttgc gagcgatata gtcgccggtt 181 gatatcccac agcggcgtta gtggtgtttg cttgggccgt cgccgaaaac aaactcgcaa 241 cggcagcagt cgctgcaggt ttagcttgcg ttataggttg aatagaccca gtagtagttt 301 tggctctaaa agctttggaa tttgttcttc gcgtaacaca tcgccttcta gttgatctct 361 cagaaatggg aggggagtat tccgctaggc gtgatatagt gcaagatagc acagctgcgt 421 tgctatacac tacctgtggc gataaacgcg ttaccctcaa cacccgcatt cctcgttgag 481 ctacaaacac taacaccggt gctagtaaaa tttcaccgct tcccggaggc aaggttttgg 541 ctagcaacct acatgagtcg tgaagctgtc gcataccccc cttccgttgt aaatttttac 601 tagcggtgtt catatttttt gagaagcgac acgtttttag ttctattaag atgcagaccc 661 ctttggcgtc agagccatgc ccaaattgca ctgtacatac acaatctggg cgccgctgtc 721 cgaggttgac ctcaaaggct agagacacgc ccatagccgt tttaagagtt tccgctggca 781 ccaattcact aaaaagggga gcaagccgcg ctccgtacac tccattcttc ttggcgcttg 841 ccaaatcttg aaccattgcg ttatagaagc ggttgtggca ccgtataccc gctctgagtc 901 tgcttctagc ggtgagacgc tgtttacgtt tcatctccac aggcagtaat ggctgcttgc 961 gtacccccgg gagaagctcc acgaagcgcc agcggaacgc ccacccggcg gcaagtaaca 1021 atagttagaa tttacctcga tggagtttat ggcatcggta agagcacgac gggacgagtt 1081 atggcatcgg ctgctagcgg aggaagtcca actctatact ttccagagcc tatggcgtac 1141 tggcggactc tttttgaaac ggacgtaatt agtggtattt acgacaccca aaaccggaaa 1201 cagcagggaa atttggccgt tgatgacgcg gcattaataa ctgcgcatta ccaaagccgc 1261 tttaccacgc cctacctgat actccacgat cacacttgta cgttgtttgg gggaaacagc 1321 ctacagcgtg gaacacaacc ggacctgacc cttgtgtttg accgccaccc ggtcgcctct 1381 accgtatgct ttccagcagc ccgctaccta ctcggtgaca tgtcaatgtg cgcgctaatg 1441 gctatggttg ctactctacc aagagaaccc cagggtggta acattgtggt taccacccta 1501 aatgtagagg agcatatacg gagactgcgt acgcgggcta gaataggaga acaaattgac 1561 attacgctga ttgctacatt gcgaaatgtg tactttatgc tagttaatac atgtcacttt 1621 ttgcgctctg ggcgagtttg gcgcgacggt tggggtgagc tacccacttc ctgtggggct 1681 tataagcatc gcgccacaca gatggacgcc ttccaagagc gcgtttcacc ggagctgggc 1741 gacactctgt ttgccctgtt taaaactcaa gaactgctag acgatcgcgg tgtaatattg 1801 gaagttcacg cttgggcgtt ggacgcgctt atgctaaaac tgcgtaacct gaatgttttc 1861 agtgccgatt taagtggtac accgcgacaa tgtgcagctg ttgtagagtc tttgctgcca 1921 cttatgagca gcaccttatc agattttgat tccgcctctg ctttagagcg ggcggcacgc 1981 acctttaacg cggagatggg cgtctgaagc tatatgtaat gtttgttgtg ccaatgccaa 2041 aattgtgaaa taaagattca tttgccaata tccatcatag cgccttgtgt gtttcgtgtg 2101 taaacttcca gtttctagtt tggggatata taagccgttg tgctcttaaa tcatttagta 2161 cagcgcggcc gagatactcg aggtatccag tggttgtata ttgggaataa atactgctgc 2221 gattatgtca caaccgtatc taaaaatagc tatcttagtg gccgctacta ttgtgtctgc 2281 gattcccgtt tggacaacac cggtttcaac ttcaccaccc caacaaacaa aattgcacta 2341 tgtgggaaat ggtacctggg tacacaacaa tacattcaac gtaaccaggt atgacaggat 2401 aaccatggaa ccagtttata ataacaattt atcctctact accttttttg ttgctatatc 2461 ggagagaaat tttcgcacgg ttaacactcc acttggagcg tccgtatttt ggattttaaa 2521 aagcgctctt aatcctccca aacaccaacc ctgtatagct aatgtgccag aacccggtga 2581 cccacgcgga ccgtgcgtca actcaactgt gagtctattt tttaatgaca atttggagcc 2641 gtttttaatg acaaaaaatc ttttggagtt tgaagtattg cccgacaact acataaccgg 2701 atggacgttt gagcggtcta aaactgtggc tacgaaaggc aacccggttg gagtggttct 2761 ctcccctccc cgaacaagtc cggatgtaaa taacaccata agagatgatg gcacccctaa 2821 acagcacttg agcattatag acgaacatac tacgttcgtg ctcgacctgc aaaattttac 2881 aaaaacttta acttatataa gcccatttgc tgcggtgtgg ccaataacag cctttcatgc 2941 cggaattaca gtaatggggt gtgacacaac tcaggcgatt gcgtacctcg gcaatgggtt 3001 tatgggtttg caaataagct cggtaaacaa tccaccgctg gagatgattg ttgcaccaaa 3061 tgacgtccgt gctcggatag ttaaccgcct tcccccaaga cgtcgacttg agccacccgg 3121 gccatatgca ggacctatct acaaggtgta cgtactcagt gatggaaatt tttacttggg 3181 tcatggcatg agcaagattt ctagggaggt tgccgcgtac ccagaagaga gtttggacta 3241 ccgctaccac ttatcgcttg ccaaccttga tactctggct atgttggcag aactttcttc 3301 cggtaagagc aaggatgtga gctattactt gtatcgcata attgcgaggc tggccgtagc 3361 aacgttttcc cttgcagaag ttatacgcct gagtgactat atgctccttc aagaggccat 3421 cgacgtggat ataaacctcc gcctaattgt acctctagtg atgaagtacg ccgctggggg 3481 aacggcagat agctcgtaca catcctcgga cgtagctatg gaccaattcg aggtggctca 3541 agcccagatt gagaagatag tagccgatat aaatatcgaa aatgaattgc gcaaacctat 3601 gtacgagcac cgctcattat tgaaaagcgt gtacgcttat tctagaaagc cgctaccaaa 3661 cgcggtaagc tttgctaacc ggctcatcac ggctatgtat aaagaagcaa ttaaggacag 3721 aattacgtgg aactctacga tgcgagaggt gttatttttt gcggttggtg ctgctgcagg 3781 ttcgcatgtt atcctcacgg atgggccaga tctcggttta catgcccaca aagattcttc 3841 gatgtttcta tctcttaacc gcaacatact cttgttgtgt acggccatgt gtacggcgtc 3901 gcatgccgtg tccgcaggag taaaactaga ggaagttatg gctggcctta ttgccggggg 3961 tgtacaattt agcctcctag aagtatttag tccatgtatg gcgtctgctc gatttgacct 4021 ggccgaagaa gagcatgtgc tagatctact gtccgttatc ccacctcgcc tgtacaccga 4081 cttaaacact ggcttggagg acgacggaac caccatccat tcatacggac ggtctgctaa 4141 cggaatttta aactctcgaa tcgcatataa ctttgatgct gttcgtgtat ttactccaga 4201 gttggcctca tgcagcacta aactaccaaa agttttggta gtgctaccct tagcatcaaa 4261 ccgaagctac gttataactc gtactgcgcc caatataggt ttaacttact ctcttgatgg 4321 ggtaaatata gcaaagccta tagtcatcag ttacatcact tatggaaatt gtcaagtttc 4381 gagagctaca atcaggtcag tttacttgga ccatccgggc cacacccagt cgtgcgtata 4441 ttgcgggagt gtgtttatgc ggtatatggc atccggagca attatggatt tgatatacat 4501 agatgacaaa gatgtagagt tgcaactggt agcaggggaa aactcaacta ttccagcctt 4561 taacccaaag ctgtatacgc ccagcatgaa tgctctttta atgtttccaa acggaacagt 4621 aaccctaatg tctgcatttg catcctactc agcttttaaa attcccagta cttatctgtg 4681 ggcttctatt gggggtttgt tgctggctat tctgatttta tatgtaatcg ttaaaatgtt 4741 atgtggtggt gtaattaata atgactatag tttgttatta aactctgagt aaacacaaac 4801 aatgtctagt gtgttgtatt gcgtgtaaac agtatacgag tgaacattta tacgtaaaat 4861 ggttaaattt tattttcgct ataaacggga atgcggcggc gagggctgct gcggcggcga 4921 gggctgctgc ggcggcgagg gctgcggcgg cggcgagggc tgcggcggcg gcggcgaggg 4981 ctgcggcggc ggcggcgagg gctgcggcgg cggcggcgag ggctgcggcg gcggcggcga 5041 gggctgctgc ggcggcggcg agggctgctg cggcggcggc gagggctgct gcggcggcgg 5101 cgagggctgc tgcggcggcg gcgagggctg ctgcggcggc ggcgagggct gctgcggcgg 5161 cggcgagggc tgctgcggcg gcggcgaggg ctgctgcggc ggcggcgagg gctgctgctg 5221 cggcggcggc gagggctgct gctgcggcgg cggcgagggc tgctgcggcg gcggcgaggg 5281 ctgctgcggc ggcggcgagg gctgctgctg cggcgtaaat gcagctattc cacaggctcc 5341 ccgcttaaat aggaaaggtg ggcgggcggt ttactggtaa atgtagttac gtagcgttcg 5401 cacttggtta caataattat tatatattat tagcaattgg tgcgaacggg gaattggtcc 5461 aatcaaatgg tttaaaaacg gccatgtgac atacaaacca atcacaacac ctagtattga 5521 ttacttatca ataggttcca aatcaataat ttcgcctaat gcgggtttgt actacctcca 5581 gctatcttcc gttgaaaatt acaacggcat ggggcggtcg ggacaccacc atatataaat 5641 atctcgcgct tgcattgtag accgcaaact cacctttaat gtagtaaatt ttacaacatt 5701 aaaatgttat tcgccttaat aaaattacaa tacagcgatg taacttcgga gtttttatgc 5761 tctgttaaca tgcacaggta caccaccacg ctttaatctc tcgctgagta agtaatataa 5821 gtagtatgcc ccctttcggc ttaagtccaa attatcaaat gctgttatta aagacacgtt //