GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS PLVRA 5882 bp ss-RNA VRL 30-MAY-1991
DEFINITION Potato leafroll luteovirus (Australian isolate) genomic RNA,
complete sequence.
ACCESSION D00733
KEYWORDS RNA polymerase; coat protein.
SOURCE Potato leafroll luteovirus (Australian isolate), cDNA to viral RNA,
200 independent overlapping clones.
ORGANISM Potato leaf roll virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Luteovirus.
REFERENCE 1 (bases 1 to 5882)
AUTHORS Keese,P., Martin,R.R., Kawchuk,L.M., Waterhouse,P.M. and
Gerlach,W.L.
TITLE Nucleotide sequences of an Australian and a Canadian isolate of
potato leafroll luteovirus and their relationships with two
European isolates
JOURNAL J. Gen. Virol. 71, 719-724 (1990)
STANDARD full staff_review
COMMENT There were six major open reading frames.
FEATURES Location/Qualifiers
virion 1..5882
/note="potato leafroll luteovirus RNA genome"
BASE COUNT 1661 a 1468 c 1423 g 1330 t
ORIGIN 5' end of viral RNA.
1 acaaaagaat accaggagaa attgcagctt tagcgcacaa actctacact cattgcaaac
61 gttatagcat atgattgtat tgacccagtc tggaatcttg ctttttgacc aaagatttaa
121 actttcaaag tttctcttcg ttgtcattgc aacaggcttt cctcttctcc tgcagcaagc
181 gagcttaatt tacggataca gtcatgaaca gatttaccgt atatgccgct cttttcttta
241 cgttctccct ttgctcaact gcaaaagagg caggatttca acatccggcc ttcaacttcc
301 gaggcacctc cattatgagt gccttgagtg gggattactc tgcggcaccc accccgcaat
361 acaaatcgtg ggccctacca tcgtcattaa acttgacgac ccaaccaccg ccgctgctta
421 cagatcggag ctactacgag ttagttcaag ctcttatatc caaaatgcgg ctggattgtc
481 aaacggttgg ggacatgaca tggaggcact tgtcagaaat gctatttgcc tcctggaact
541 ccgtgaaaga agtatccctc aaagcggcct ccgtaacctt atgggcaatt atcagcattt
601 ggttcggtct ctattggacg cttgccaggt tgatcacttt gttcctctgg actttcagca
661 tagaagcctt ttgcttaatt ttgctcggtt gtataaccag cttgatctac aagggcgtgc
721 taaatctttc agagcactta ccggtattcc tatttatgtc ccctctgaag attatctgga
781 gggtagcttt ctccaaaaag aactacaaga atgagaaagc tgtggaaggg tacaacgggt
841 ttacggtccc acaaaaaccg ccaaagtctg ccgtgattga actacaacat gagaacggca
901 gccatctcgg gtacgcgaac tgtgttcgtt tatacagtgg agagaacgcc cttgttacag
961 cagaacactg cttagaggga gcttatgctg cgtcgttgaa gactggaaac aggattccga
1021 tgaaacagtt ctttcccatc ttcaaaagtg cccaaaatga tatctccatc ctcacaggcc
1081 cacccaattg ggaaggtctg ttggctgtta aaggagctca ctttctcact gctgacaaag
1141 tcggccgtgg accagcctct ttctacactc tagagaaagg ggaatggatg tgccacagcg
1201 cccaactcga cggagcccat caacaatttg tctctgtctt gtgcaacact gaaccaggtt
1261 attctggaac gggtttctgg tcgtctaaga ccttgctggg cgtgcttaaa ggattcccat
1321 tggacgaggg gtgcaactac aatgttatgt ctgttatacc ctcagtccct ggtattactt
1381 cccccaatta cgtatttgaa tctactcatg tgaagggtaa aatcttctca attgaggcag
1441 tacaggaaat ggagcgggaa gcttctaacg ctctgaaaaa cttggccaag ttcagatcac
1501 tcactggtaa aaactggtat gagtacgatg agaacgagga tatgtttgga gatgagaaga
1561 aggcagctga agaagcgccg gcagagaaaa ctgctcaaac aaactcagca gggaagactg
1621 ttttatcaac ttcggcagag aaaactgcct caccaaacaa gcctttaaat gggcaagcgg
1681 caccgtccgc caaaacaaac ggcaactcca acatccccga cgccgctaca agcgcaccac
1741 caatggacaa aatggtcgaa cagatcatca cagctatggt ggggagaatc aatctctcgg
1801 agatagagga gaagatagtg agcagggtgt ctcagaaagc cctgcagaag cccaaacaaa
1861 agaagcgcgg aaggcgtgga gggaagaaca agcaaaacag ttcacctcct acttcaacgc
1921 aatctacaag tggggcgccc aagaaggagg ctgcccccca ggcttcagga ggtgcgggca
1981 catccccggc tactaccacc cccgcaccag aggcgaaacc cagtgggggc aaagactctg
2041 ccaagttcat cccgagctgg cggagaaaac agcaggattc ggctggccaa aagccggatc
2101 tgaagctgaa ctccaaagcc tgaatctaca ggctgccagg tggctccaac gcgcggagtc
2161 ggccactatc cctggcgcag aagcaagaaa gcgcgtgatt gagaaaacag tggaggcata
2221 cagaaattgt gtaactaacg ccccactgtg ctcccttaaa tccaaactgg attgggctaa
2281 ctttcaacaa gatatccgtg aagcagtcca gtcccttgag ctagacgctg gtgtaggcat
2341 tccctatatc gcgtatggcc tccccacaca ccgaggatgg gttgaggacc ataagcttct
2401 cccagtgctc actcagctga cctttgaccg actacagaag atgtcggagg ccagctttga
2461 ggatatgagc gcagaagagc tggttcaaga agggctctgt gatcctatca gactatttgt
2521 caaaggagag ccccacaaac agagcaaact cgatgaaggc cgctaccgcc tcatcatgtc
2581 tgtttccttg gtggatcaac tggtagcccg ggttctgttc caaaatcaga acaaaaggga
2641 aatttccctg tggaggtctg tgccttccaa gcccggcttc ggcctttcaa ctgacactca
2701 aactgctgaa ttcttagagt gtcttcaaaa ggtgtccgga gcgccatctg tggaagaatt
2761 gtgtgcaaat cacaaggagt acacgcgccc aaccgactgt tctggtttcg actggtcagt
2821 cgcgtattgg atgctggagg atgacatgga ggtgagaaat cgcctaacat ttaacaacac
2881 ccagctcacc aagcgcctta gggctgcctg gttgaagtgc ataggaaatt ctgtcctgtg
2941 cctatctgat ggcactttac ttgcccaaac tgttcccggc gtgcaaaaga gtggaagtta
3001 taatacaagt tcttccaact ccagaatccg ggttatggct gcctatcatt gtggcgccga
3061 ctgggcgatg gccatgggtg atgatgcttt agaagccccc aactccaacc tagaggagta
3121 taaagcacta ggcttcaaag tcgaggtagg tcgagaactc gaattctgtt cacacatttt
3181 cagaaatccg accctcgccg ttccggttaa taccaacaaa atgctttata agttgatcca
3241 tggttataat ccggaatgtg gcaatccaga agtgattcaa aactatctgg ctgcagtatt
3301 ctctgtgctg caggagctcc gacatgatcg tgagctcgtt gccaagctcc accagtggtt
3361 ggttccgagt gccaccacaa aagaacactg aaggagctca tttgactagc caagcatacg
3421 cgagttgcaa gcattggaag ttcaagcctc gttacaacaa ccggacaaaa tagattataa
3481 attcatagcg ggatttgctt caggattctt atccgcaatc ccaatttcag tagccggttt
3541 atatttagtt tacctaaaga tttccgatca cgttcgatct atcgttaatg agtacggtcg
3601 tggttaaagg aaatgtcaat ggtggtgcac aacaaccaag aaggcgaaga aggcaatccc
3661 ttcgcaggcg cgctaacaga gtacagccag tggttatggt cacggcccct gggcaaccca
3721 ggcgccgaag acgtagaaga ggaggcaacc gccgctcaag aagaactgga gttccccgag
3781 gacgaggctc aagcgagaca ttcgtgttta caaaggacaa cctcgtgggc aactcccaag
3841 gaagtttcac cttcgggccg agtctatcag actgtccggc attcaaggat ggaatactca
3901 aggcctacca tgagtataag atcacaagta tcttacttca gttcgtcagc gaggcctctt
3961 ccacctccgc cggctccatc gcttatgagt tggaccccca ttgcaaaata tcatccctcc
4021 agtcctacgt caacaagttc caaattacga agggcggcgc taaaacctat caagcgcgga
4081 tgataaacgg ggtagaatgg cacgattcgt cagaggatca gtgccggata ctgtggaaag
4141 gaaatggaaa atcttcagat cccgcaggat cctttagagt cactatcaga gtggctttgc
4201 aaaaccccaa ataggtagac tccggatcag agcctggtcc aagcccacaa ccaacaccca
4261 ctccaactcc ccaaaagcat gagcgattta ttgcttacgt tggcataccc atgctgacca
4321 ttcaagctag ggagaacgac gaccaaatca tattgggttc cttagggagc caaaggatga
4381 aatacattga ggacgagaac cagaactata cgaatattag ttctgagtat tactctcagt
4441 cgagcatgca agccgtcccc atgtattact tcaatgtgcc aaaagggcaa tggtcggtcg
4501 acattagctg cgaagggtat caacccacta gcagtacctc ggatccgaac cgaggcagga
4561 gtgacgggat gatcgcgtac tcaaacgcgg attccgacta ttggaacgtt ggtgaagcgg
4621 atggtgtcaa aatttcgaag ctacgcaacg ataacaccta ccgccaaggt cacccagaac
4681 ttgaaataaa ctcgtgtcat tttcgcgagg gtcaactttt agaacgggat gctacaatta
4741 gcttccacgt ggaagcgcct actgatgggc gattctttct cattggcccc gccatccaga
4801 aaaccgcaaa gtataactat actatctcat acggtgactg gactgaccgg gatatggaac
4861 tggggttgat cacagtggtg cttgatgaac atttagaagg cactgattcg gcttacagat
4921 tacggcggcc cctacgagag ggccacacct atatggtgtc gccgaatgaa ccggaaggaa
4981 aaccggttgg aaacaaacca agggacgaaa ccccgataca aacgcaggaa agaaaacctg
5041 atcaaactcc gtctgacgac gtatccgatg ctggttcggt aaacagcggc ggctcaactg
5101 agtcgctgca cttggagttc gggttaaact cagatagtac ttacgatgct acagtcgacg
5161 gtacagactg gcccagaatt cctccaccaa ggcacccacc tgaacctaga gtttccggca
5221 attcaagaac tgtcactgac ttttctccga aagccgatct attagagaat tgggatgctg
5281 aacacttcga ccctggttat tccaaagaag aagtcgctgc tgctactatt atagcgcacg
5341 gcagtattca agatgggcga agtatgttgg agaagagaga ggaaaatgtc aagaacaaaa
5401 cctcctcctg gaagcccccg ttacccaaag cggtgagccc agccatagcc aaattgcgct
5461 caattcgcaa atcccaaccc ctcgagggag ggacccttaa gaaagacgct actgatggtg
5521 tctcatctat aggcagtggt tctctaacag gtggcacgct taagaggaag gcaacttttg
5581 aagagaattt gctacagacc ttaacaactg aacaaaggct gtggtacgag aatttgaaga
5641 aaactaaccc tccagctgct acccaatggc tatttaaata tcagccacct ccccaagtag
5701 atagaaatct ggctgaaaag ccattccaag ggaggaaatg agtcgactta cgacttaaaa
5761 ctgagtgtct gccggacatt aagcggaacg aaagccgaaa ggtgattagg ctctcaacgc
5821 ctgcgagaga ccgtcgaaag acgcgactgt gtagccagga tcctcttaca gggttgtgta
5881 gt
//GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS PLVRC 5883 bp ss-RNA VRL 30-MAY-1991
DEFINITION Potato leafroll luteovirus (Canadian isolate) genomic RNA, complete
sequence.
ACCESSION D00734
KEYWORDS RNA polymerase; coat protein.
SOURCE Potato leafroll luteovirus (Canadian isolate), cDNA to viral RNA,
clones pLP93, pLP79 and pB2a.
ORGANISM Potato leaf roll virus
Viridae; ss-RNA nonenveloped viruses; Isometric ss-RNA viruses;
Luteovirus.
REFERENCE 1 (bases 1 to 5883)
AUTHORS Keese,P., Martin,R.R., Kawchuk,L.M., Waterhouse,P.M. and
Gerlach,W.L.
TITLE Nucleotide sequences of an Australian and a Canadian isolate of
potato leafroll luteovirus and their relationships with two
European isolates
JOURNAL J. Gen. Virol. 71, 719-724 (1990)
STANDARD full staff_review
COMMENT There were six major open reading frames.
FEATURES Location/Qualifiers
virion 1..5883
/note="potato leafroll luteovirus RNA genome"
BASE COUNT 1647 a 1484 c 1424 g 1328 t
ORIGIN 5' end of viral RNA.
1 acaaaagaat accaggagaa attgcagctt tagcgcacaa actctacact cattgcaaac
61 gttatagcat atgattgtat tgacccagtc tggaatcttg ctttttgacc aaagatttaa
121 actttcaaag tttctcttcg ttgtcattgc aacaggcttt cctcttctcc tgcagcaagc
181 gagcttaatt tacggataca gtcatgaaca gatttaccgc atatgccgct cttttcttta
241 cattctccct ttgctcaact gcaaaagagg caggatttca acatccggcc ttcaactttc
301 gaggcacctc cactatgagt gccttgagtg gggattactc tgcggcaccc accccgctat
361 acaaatcgtg ggccctacca tcgtcattaa acttgacgac ccaaccaccg ccgccgctta
421 cagatcggag ctactacgag ttagttcaag ctcttatatc caaaatgcgg ctggattgtc
481 aaacggttgg ggacatgaca tggaggcatt tgtcagaaat gctatttgcc tcctggaact
541 ccgtgaaaga agtatccctc aaagcggcct ccgtgacctt atgggcaatt atcaacattt
601 ggttcggtct ttattggacg cttgcgaggt tgatcacttt gttcctctgg actttcagca
661 tagaagcctt ttgcttaatt ttgctcggtt gtataaccag cttgatctac aagggcgcgc
721 taagtctttc agagcactta ccggttttcc gtttaatctc ccctctgaag attatttgga
781 gggcagcttt ctccaaaagg aattacaaga atgagagggc tgtggaagga tacaaagggt
841 tttcggtccc acagaaaccg ccaaagtctg ccgtaattga actacaacat gaaaacggca
901 gccatctcgg gtacgcgaac tgcattcgct tatacagtgg agagaacgcc ttggtgacag
961 ctgaacactg tctagaaggc gctttcgcaa cgtcgttgaa aactggaaac aggattccga
1021 tgtcgacttt cttccccatt tttaaaagtg cccgtaatga tatctccata ctagtaggtc
1081 cacccaactg ggaaggtcta ctatcagtca aaggagctca tttcattaca gctgacaaaa
1141 tcggcaaagg tcctgcctct ttctacactc ttgagaaagg ggagtggatg tgccatagtg
1201 ccaccataga tggagcccat caccagttcg tgtctgtttt atgcaacact gataccggat
1261 attccggaac agggttttgg tcttcaaaga atctgcttgg tgtgcttaaa ggcttcccac
1321 tggaagaggg atgtaactac aatgttatgt ctgttatacc ctcagtccca ggaatcactt
1381 ccccaaatta tgtgtttgag tcgaccgccg taaaaggccg cgtcttctcg gatgaagctg
1441 tgaaagagct agagcgggaa gcatccgaag ccgtcaagaa gcttgccaga tttaaatcac
1501 ttgccggcaa gaactgggct gatgattatg actccgatga ggattacggt ctggagagag
1561 aggctgcaac aaatgcgccc gcagagaaaa ctgctcaaac aaactcagca gagaagactg
1621 ctccatcaac ttcagcagag aaaactgctc caacaaacaa gcctttaaat gggcaagcgg
1681 caccgtccgc caaaacaaac ggcaactccg acatccccga cgccgctaca agcgcaccac
1741 caatgaacaa aatggtcgaa cagatcatca cagctatggt ggggagaatc aatctctcgg
1801 agatagagga gaagatagag tgcagggtgt ctcagaaagc cctgcagaag cccaaacaaa
1861 agaaacgcgg aaggcgtgga gggaagaaca agcaaaacaa tttacctcct acttcgacgc
1921 aatctataag tggggcgccc aagaaggagg ctgcccccca ggcttcagga agtgcgggaa
1981 tatccccggt tactaccacc cccgcaccag aggtcaaacc aagtgggggc aaaaactctg
2041 ccaagttcat cccgagctgg cggagaaaac agcaggattc ggctggccaa aagccggatc
2101 tgaagctgag ctccaaagcc tgaatctaca ggctgccagg tggctccaac gcgcggagtc
2161 ggccactatc cctggcgcag aagcaagaaa acgcgtgatt gagaaaacag tggagacata
2221 cagaaattgt gtaactaacg ccccactgtg ctcccttaaa tccaaactgg attgggctgg
2281 ctttcaacaa gatatccgtg aagcagtcca gtcccttgag ctagacgctg gtgtaggcat
2341 tccctatatc gcgtatggcc tccccacaca ccgaggatgg gttgaggacc ataagcttct
2401 cccagtgctc actcagctga cctttgaccg actacagaag atgtcggagg ccagctttga
2461 ggatatgagc gcagaagagc tggttcaaga agggctctgt gatcctatca gactatttgt
2521 caaaggagag ccccacaaac agagcaaact cgatgaaggc cgctacctcc tcatcatgtc
2581 tgtttccttg gtggatcaac tggtagcccg ggttctgttc caaaatcaga acaaaaggga
2641 aatttccctg tggaggtctg tgccttccaa acccggtttt ggcctttcaa ctgacactca
2701 aactgctgaa ttcttggagt gtcttcaaaa ggtgtatgga gcgccatctg tggaagaatt
2761 gtgtgcaaat cacaaggagt acacgcgctc aaccgactgt tccggtttcg actggtcagt
2821 cgcgtattgg atgctggagg atgatatgga ggtgagaaat cgcctgacat ttaataacac
2881 ccagctcacc aagcgtcttc gggctgcctg gttgaagtgc ataggaaact ccgtcttatg
2941 cctgtccgat ggcactttac ttgcccaaac tgttcccggt gtgcaaaaga gcggaagtta
3001 caatacaagt tcctccaact ctagaatccg ggttatggct gcctatcact gtggcgccga
3061 ctgggcaatg gccatggggg acgatgccct cgaagccccc aactccgacc tggaggagta
3121 taaaacacta ggtttcaaag tcgaggtagg tcgagaactc gaattctgtt cacacatctt
3181 cagaaatccg accctcgccg ttccggtcaa taccaacaaa atgctttaca agttgatcca
3241 tggttataat ccggaatgtg gcaatccaga agtgattcaa aactatctgg ctgcagtatt
3301 ctctgtgctg caggagctca gacacgatcg tgagctcgtt gccaagctcc accagtggtt
3361 ggttccgagt gccaccacaa aagaacactg aaggagctca ctaaaactag ccaagcataa
3421 gcgagttgca agcattggaa gttcaagcct cgttacatca accggacaaa atagattata
3481 aattcttagc gggattcgct ttaggatttt catccgcaat cccattttca gtagccggtt
3541 tatattttgt ttacctaaag atttcctccc acgtgcgatc aattgttaat gagtacggtc
3601 gtggttaaag gaaatgtcaa tggtggtgta caacaaccaa gaaggcgaag aaggcaatcc
3661 cttcgcaggc gcgctaacag agttcagcca gtggttatgg tcacggcccc tgggcaaccc
3721 aggcgccgaa gacgcagaag aggaggcaat cgccgctcaa gaagaactgg agttccccga
3781 ggacgaggct caagcgagac attcgtgttt acaaaggaca acctcgtggg caactcccaa
3841 ggaagtttca ccttcgggcc gagtctatca gactgtccgg cattcaagga tggaatactc
3901 aaggcctacc atgagtataa gatcacaagc atcttacttc agttcgtcag cgaggcctct
3961 tccacctcct ccggttccat cgcttatgag ttggaccccc attgcaaagt atcatccctc
4021 cagtcctacg tcaacaagtt ccaaattacg aagggcggcg ccaaaactta tcaagcgcgg
4081 atgataaacg gggtagaatg gcacgattct tctgaggatc agtgccggat actgtggaag
4141 ggaaatggaa aatcttcaga tcccgcagga tccttcagag tcaccatcag ggtggctttg
4201 caaaacccca aataggtaga ctccggatca gagcctggtc caagcccaca accaacaccc
4261 actccaactc cccagaagca cgagagattt attgcttacg ttggcatacc tatgctaacc
4321 attcaagcta gggagaacga cgaccaaatc atattgggtt ccttagggag ccaaaggatg
4381 aaatatatag aggacgagaa ccagaactat acaaatatta gttctgagta ttactctcaa
4441 tcgagtatgc aagccgtccc tatgtattat ttcaatgtcc cgaaagggca atggtcagtc
4501 gatatcagct gcgaagggta tcaacccact agcagcacct cggatccaca ccggggtagg
4561 agtgacggga tgatcgcgta ttcaaacgcg gattccgatt actggaatgt tggtgaagcg
4621 gatggtgtca aaatttcgaa gctacgcaac gataacacct accgccaagg tcacccagaa
4681 cttgaaatta actcgtgtca ttttcgcgag ggccaactcc ttcaacggga cgctacaatt
4741 agcttccacg ttgaagcgcc tactgatggg cgattctttc tcgttggtcc cgctatccag
4801 aaaaccgcaa agtataacta tactatctca tacggtgact ggacggaccg agacatggag
4861 ctggggctga tcactgtggt gcttgatgaa catttagaag gcactggttc ggctaacaga
4921 gtgcggcggc ccccacggga gggccacatc tatatggcgt cggcgcgcga accggaagga
4981 aaaccggttg gaaataaacc aagggacgaa accccgatac aaacgcagga aagacaacct
5041 gatcaaactc cgcctgacga cgtatccgat gctggttcgg taaacagcgg cggctcaact
5101 gagtcgctgc aattggagtt cggagcaaac tcagatagta cccacgatgc tacagtcgat
5161 ggtacagact ggcccagaat tcctccacca aggcacccac ccgaacttag agtttccggc
5221 aattcaagaa ctgttactga cttttctccg aaagccgatc tattggagaa ttgggatgcc
5281 gaacacttcg accctggtta ttccaaagaa gatgtcgctg ctgctactat tatagcgcac
5341 ggcagtattc aagatgggcg aagtatgctg gagaagagag aggaaaatgt caagaacaaa
5401 acctcctcct ggaagccccc gttacctaaa gcggtgagcc cagccatagc caaattgcgc
5461 tcgattcgca aatcccaacc cctcgaggga gggaccctta agaaagacgc cacgtatggt
5521 gtctcatcta ttggcagtgg ttctctaaca ggtggcacgc ttaagaggaa ggcaactatt
5581 gaagagcgtt tactgcagac cttaacaact gaacaaaggc tgtggtacgc gaatttgaag
5641 aaaactaacc ctccagctgc cacccaatgg ctgtttgaat atcagccacc tccccaagta
5701 gatagaaaca tagctgaaaa tccattccaa gggaggaaat gagtcgactc acgacttaaa
5761 actgagtgtc cgccggacat taagcggaac gaaagccgaa aggtgattag gctctcaacg
5821 cctgctagag accgtcgaaa gacgccactg tgtagccagg atcctcttac agggttgtgt
5881 agt
//