GenBank-Updates@genbank.bio.net (05/30/91)
LOCUS PMPRNA 6656 bp ss-RNA VRL 30-MAY-1991
DEFINITION Papaya mosaic virus genome, complete sequence.
ACCESSION D00580
KEYWORDS capsid protein; complete sequence.
SOURCE Papaya mosaic virus, cDNA to viral RNA, clones FP7, H3, T21, CP21,
and TP11.
ORGANISM Unclassified.
Unclassified.
REFERENCE 1 (sites)
AUTHORS Lok,S. and Abouhaidar,M.G.
TITLE The nucleotide sequence of the 5' end of papaya mosaic virus RNA: S
ite of in vitro assembly initiation
JOURNAL Virology 153, 289-296 (1986)
STANDARD full staff_review
REFERENCE 2 (sites)
AUTHORS Abouhaidar,M.G.
TITLE Nucleotide sequence of the capsid protein gene and 3' non-coding re
gion of papaya mosaic virus RNA
JOURNAL J. Gen. Virol. 69, 219-226 (1988)
STANDARD full staff_review
REFERENCE 3 (bases 1 to 6656)
AUTHORS Sit,T.L., Abouhaidar,M.G. and Holy,S.
TITLE Nucleotide sequence of papaya mosaic virus RNA
JOURNAL J. Gen. Virol. 70, 2325-2331 (1989)
STANDARD full staff_entry
COMMENT
[1] sites.
[2] sites.
There is also one other ORF(ORF6) located within ORF1. The ORF6
product showed no similarity to other potexvirus ORF products.
FEATURES Location/Qualifiers
virion 1..6656
/note="papaya mosaic virus genome (excluding the poly(A)
tail"
variation 45..45
/note="c in [J. Gen. Virol. 70, 2325-2331 (1989)]; unknown
nucleotide in [Virology 153, 289-296 (1986)]"
variation 55..55
/note="c in [J. Gen. Virol. 70, 2325-2331 (1989)]; t in
[Virology 153, 289-296 (1986)]"
variation 76..76
/note="c in [J. Gen. Virol. 70, 2325-2331 (1989)]; t in
[Virology 153, 289-296 (1986)]"
CDS 100..4743
/note="ORF1 (176K protein)"
variation 138..138
/note="c in [J. Gen. Virol. 70, 2325-2331 (1989)]; g in
[Virology 153, 289-296 (1986)]"
CDS 4727..5428
/note="ORF2 (26K protein)"
CDS 5382..5717
/note="ORF3 (12K protein)"
CDS 5653..5859
/note="ORF4 (7K protein)"
variation 5799..5799
/note="a in [J. Gen. Virol. 70, 2325-2331 (1989)]; g in
[J. Gen. Virol. 69, 219-226 (1988)]"
variation 5809..5809
/note="t in [J. Gen. Virol. 70, 2325-2331 (1989)]; c in
[J. Gen. Virol. 69, 219-226 (1988)]"
CDS 5889..6536
/note="ORF5 (capsid protein)"
variation 5920..5920
/note="t in [J. Gen. Virol. 70, 2325-2331 (1989)]; c in
[J. Gen. Virol. 69, 219-226 (1988)]"
variation 5948..5948
/note="g in [J. Gen. Virol. 70, 2325-2331 (1989)]; a in
[J. Gen. Virol. 69, 219-226 (1988)]"
variation 5984..5985
/note="tc in [J. Gen. Virol. 70, 2325-2331 (1989)]; ct in
[J. Gen. Virol. 69, 219-226 (1988)]"
variation 6056..6056
/note="t in [J. Gen. Virol. 70, 2325-2331 (1989)]; c in
[J. Gen. Virol. 69, 219-226 (1988)]"
variation 6080..6080
/note="c in [J. Gen. Virol. 70, 2325-2331 (1989)]; t in
[J. Gen. Virol. 69, 219-226 (1988)]"
variation 6115..6119
/note="ccaca in [J. Gen. Virol. 70, 2325-2331 (1989)];
deletion in [J. Gen. Virol. 69, 219-226 (1988)]"
BASE COUNT 2009 a 1677 c 1513 g 1457 t
ORIGIN 5' end of viral RNA.
1 gaaaagaaac acaaagcaaa gcaaagcaaa gcaactcaaa taaaccatat ttggccaagg
61 cacttggtaa tcaaacgggc acaaccctag attaacgata tggcaaattt gaggagtgtt
121 ttcgaacagt tgaacgacgt ctcactccgg gctgttattc aagaagaggc ctacagagac
181 attaagctca ctattaagga aactaaaacc tacaatcctt atgcacatcc agtagcagta
241 gcggatagtt tagaaaaatt aggaatagaa actaacccct ttgccgtcaa ggcgcatacg
301 catgccgcgg caaagacaat agaattagat atgtacaaaa tagtttcttt ctacctccca
361 aaggagaacc ccaccacctt tatgttcatg aagaggagca agttgcaata ttttagaaga
421 ggcccacagc aaaaagatgt gttcctcaat gctcacatag aacccaaaga cgtggctagg
481 tatgacgtgg acaccctttt tgacaagaac gtgaccccac agattaccac aaacacagcc
541 tttatggggg ataccctcca ttttcttcca ctaacagcga ttgaaaggat ctttaaatcc
601 tcccccaaac ttcaaaccct ctacgccact atggtactcc caccggaggc cctgcataga
661 ctgcattctc tgcaccctgg tatatatgaa ttagaatttc accaagaaca tttcatctac
721 aaaccagggg gtcatgctgg ggcagcgtac atccacaaat acgagcaact cgagtggatt
781 aaagtgggaa ggtttaagtg ggcggacgag aaggggctca cccacatggt gacctcacag
841 attttggaaa ctaaaggtgc caaccacctc ttcattttcc agagagggag gtttctgact
901 ccagaattga ggtgtttcag cactgagaca aaatatgtca ccatgcctcc catcttcctc
961 cccaagcagt ttaatgcccg gttgccaatt aagaaaacca ccgcccaaca attgtttctc
1021 tacgtaaaat cagtgaaaaa tgtaacagag agggacatct gggcaaagat gagacagttg
1081 ctcaagactt cggagctaca agattacaat ccaagagagg tgactctgct ggtgaactat
1141 tttctcttga ttgccagatt aaggtcggaa acgtgttttg acaacgtcct cagcggggga
1201 atgttcaaga aactcttcaa acccttcatc gcatggtggg agatccaaaa acacaaaatt
1261 ttcggaaatg aggagtttga acagttgatg gaagctctgg agtgggtgga tgtaacactg
1321 acctacccaa caaaaacttt tgacaatcgg ggttgggtgg ttaagctgga agcgaggagg
1381 ggttacgagt ggttcgctga tgagatgcac aagccgaagg gtccagaact aaacttggag
1441 gagaagaaaa cggatccgga cgccgcatcc tacgaaaaat acttgaaagc cctgagcctt
1501 ttacagaaag aaccggaggt catggaagcc aaagaagcag aggcaacaga tgaaccccaa
1561 aggcccgaag ttaaggaaga gcaggcagag gcttccacga gtgggagggc tgaagaaatt
1621 caagaggatc cggcaaccaa gaaagggaag gaggagccga accccaatcg ggacctgctc
1681 tgcccatgcg gactacatct aaagatcaaa aatgccgaat ttcctgaact tccggtactc
1741 gatcatccag atcatctcac cggaagaaaa gcatggttct tctcaaagga tggaaagcca
1801 tactcctaca caggaggctc acatgcatct cgaggctggc caaattggct ggagaaaatt
1861 ttagccgcaa tagaaatcaa agagccactg ccggaattca accaatgctt agtccagcag
1921 tttaaactcc aagcggccat cccattccac cgagatgatg aaccgtgtta tccaaagggt
1981 caccaggttc tcaccatcaa ccactcaggg gaatgcctca cccaaatagc ttgccaaaaa
2041 ggaaaggcaa gtataactat gggattcggt gactactact tgagcccagt gggattccaa
2101 gagtcccaca agcatgcggt aagcaacacc acagggggaa gggtgtctct gactttcaga
2161 tgcacagtcc agcaaaataa atttaatgat gatggaagta tggaagccct tgataacctt
2221 ccttggaaag cgtggatccc gaaactgcaa aatttaggat tccaaggaag gcagcttcag
2281 tatgatccta atggagcact gatcagcccc attgaggaaa ttcgaagcat gcccaagtgc
2341 aagcctgaag gggttccaga agtagtttac aagacgctgg acggactagc ccgtgcgcca
2401 actccatatt ctccaaaccc tatccgagct agagcataca cctcagatgt caaaaactgc
2461 agaattgggg ccctgctaag gcaacaaggt aaggagtggg gatgcaggtt tgacgcattg
2521 gtagaagctg gcaagagaga gttggccatc tccgtaattc acggagcggg aggaagcggg
2581 aagtcacaag cattgcagac cctgattaag gacaacccag agcttgatat cacggtggtc
2641 ctcccaacca atgaactcag gctggattgg cttcggaagt taccaaaagc cccgcaggaa
2701 aagttcaaaa ccttcgaaaa ggcattgtta gctcccccca ccccaatagt catcttcgat
2761 gattatggca aactaccggc aggctacgtg gaagccttct gcttgtactt ctccactgta
2821 caactgatca tcctaaccgg agattgcaaa cagagtgtgc accatgaaag taatgagaat
2881 gccacaacaa gctcaataga acccctggtt aaagaagcct cagagctttg caggtattac
2941 atcaatgcca cacacagaaa taagaaagat ctggccaaca aactgggagt ttactcagag
3001 aaaaccgggt tgaccgaagt gacccatggc accaccccga tccccgggct tcacatgcta
3061 gtgccctcgc tttacaaaaa gcaagccttt tcagagatgg gacataaggt gtccacctac
3121 gcgggctgtc aggggatcac cgctccaaaa atccaaatct tgctaacaga ggaaacctct
3181 ctctgctcca gagaggtcct gtacactgca ctatcgaggg ccgtacattc aatccatttt
3241 gtaaacgcga gcccaaacaa tcaggctttt tggaaaaaac tggagtgcac tccatacctc
3301 aaggctttcc tgtcaacttt gagagaagaa gtggcacagc ctattgaaga gaagaaagct
3361 gaacccactc cagtagagcc cccacgaaca cacattgcaa aggaagatgc aatggtggaa
3421 tatgaaaacg tcatcgagaa aatgcctgaa aagcatgaaa gggaaatttt ctcagaaaaa
3481 cacgggcaca gcaactgtgt tcaaaccgaa gaccccttca ttcagatgtt ttctcaccaa
3541 caggcaaaag atgacaccct actttgggct accattgaag ccagattggt catctccaac
3601 ccaaaggcca attggcaaga gtaccttgaa aagaggccag tgggagaagt gctgtttgaa
3661 tcatacaagc gggccatgca cttgccaaag atgcccattc cctttgagga ggatctttgg
3721 aactcgagca tgcatgaggt gcaaaagacc tacttgtcca agcctgaaaa catgatcaag
3781 aatggaatgg ccaggcagag ccccgactat gacccaaatg tgatctccct gttcctgaag
3841 tctcagtggg tgaagaaaat ggaaaaatta ggggcaataa agatcaaacc cggtcaaacc
3901 atagcctctt ttcatcaagc cactgtaatg ctctttggaa ctatggcaag atacatgagg
3961 agaatgcggg aagtcttcca acctgcccac atcaggatta actgtgagat gaccccggaa
4021 gacctgagct cttgggcggc tggagaaggg ggacactgga agtttaaagg cccttcactt
4081 gccaatgact tcacagcatt tgaccagtca caagatggtg ctatgctaca gtttgaaatt
4141 cttaaagcta ggcaccactc catcccagag gacattttgg acgcgtacct cacgataaaa
4201 actaactcaa agatattcct gggaacattg gcaataatga gattgaccgg tgaggggccc
4261 actttcgacg caaacactga atgcaatatc gccttcacac acactaaatt caacattcca
4321 gaaggcacag cacaattgta tgcaggggat gactcagcaa tcgatggttt gcctgcacta
4381 agaccaagct ttaagatgat cgaacaaaag ctcaccttga ggtccaaacc ccaggtagcc
4441 cttcaacaaa aaggagactg ggcagagttc tgtggcttcc gaatcacccc aaaagggctg
4501 atcaaggacc ccaagaaact ccatgcctct tggatgctag aaaagaagaa ggggaatgtt
4561 aaaaacgtat tgagatcata cgagcttgat ttggcgttag cataccaaca caaggatagc
4621 ctgcacgaac tactttccga ggaggagctc aagtaccact acgagacggt tcgttccata
4681 gttaagtcag gaggaggtgg agttttgaat acttacatct ccaaggatga atcactttat
4741 taaccttctc gtagctgagg gatttgtcag gactaacgaa cccctcactg accaacttgt
4801 agtccattcg gtagccggaa gtggaaagtc aaccctcatt aggaaatttc tggaggagca
4861 accccttgca agagcataca cgcactgcag ggccgaccca cccaatctcg aggggaggtt
4921 cattcagccg ttcaagggac cgtgtccaga tcatttcaac atactggacg aatactgcaa
4981 ggagccaatc tcggccaagt tccaagtcct catagccgac ccgcttcaat acaggactca
5041 acatctgcga cctcactacg tcaatcataa atcccacagg ttgggacctg agacttgcaa
5101 actactgtcc agccttggaa tcaaggtcga aagtcataga agagaccgtg acgtggtgac
5161 cctgagtggt atcttcggtt caccaatcct aggccaggct attgcgctag acaggtctgc
5221 cagtgacctg ctaagagctc acggaatcca ggccctctgc cccatcgaat caattggcca
5281 ggaataccca gtggtgacag tagtttcttc ggagcccttg agaaacgtga ggttcaagga
5341 tcaagtgtac atagccctat ccagacacac tgaacagctc catgtcctct caccagaatt
5401 tcctcacacc acctcccgac cacagtaagg ctatcttagc tgtagcagta ggagtaggtt
5461 tagctatagt tctgcatttt tctctctctt ataagttgcc ctcaccaggt gataacattc
5521 acagtcttcc ttttggaggc acgtacaggg acggaactaa atccattatt tacaactctc
5581 cccacagagg accgggacag tcaggcgccc tgccaatcat tacggtgttt gccatcatcg
5641 agtgtaccct ccatgttctc aggaaaagag ataaccctgt tcgccctcag cactctgatt
5701 gccctaattg ttcttaacta catgtcagcg actcccaatc cggtgtgtct gattgaactc
5761 acaggacata gtgctgttct aagaggaaat aactgtgaaa gcttaacatc aggtgttata
5821 gaggccctat ccgcccacct acacgggctt aggaactagc ttcattcgaa attcaaaatt
5881 ctgttttaat gtctaagtca agtatgtcca cacccaacat agccttcccc gccatcaccc
5941 aggaacagat gagctcgatt aaggtcgatc caacgtccaa tcttctgccc tcccaagagc
6001 agttaaagtc agtgtccacc ctcatggtag ctgctaaggt tccagcagcc agtgttacaa
6061 ctgtggcatt ggagttggtc aacttctgct atgacaatgg gtccagcgcg tacaccacag
6121 tgactggccc atcatcaata ccggagatat cactggcaca attggctagt attgtcaaag
6181 cttccggcac ttcccttaga aaattctgcc ggtacttcgc gccaataatc tggaatctga
6241 ggacggacaa aatggctcct gccaattggg aggcttcagg atacaagcca agcgccaaat
6301 ttgccgcgtt cgacttcttc gacggggtgg agaatccggc ggccatgcaa cccccttcgg
6361 gactaatcag gtcgccgacc caggaagagc ggattgccaa tgctaccaac aaacaggtgc
6421 atctcttcca agccgcggca caggacaaca actttaccag caactccgcc ttcatcacca
6481 aaggccaaat ttctgggtca accccaacca tccaattcct tccacccccc gaataaacac
6541 acttgaccca gcccgttgtt tagcactatt tgttggggct attgagtttt caaaatgtgc
6601 ttttgctata gtagacgaaa cttactacct agtttggttt tgcaaatttc ctttcc
//