dadler@blake.acs.washington.edu (David Adler) (06/30/90)
Does anyone know of molecular modeling software that will allow display of secondary and tertiary structure for defined DNA sequences? We have access to a variety of computers: VAX, IBM PC, Macintosh, NeXT, etc. Thanks -- David A. Adler University of Washington Pathology SM-30 Seattle, WA 98195
kozar@IAGO.CALTECH.EDU (Lee G. Kozar) (06/30/90)
There are a couple of them : Atlantic Software P.O. Box 299 Wenham, MA 01984 DNA/RNA Builder " you can create models of DS and SS DNA and RNA up to 1200 atoms starting with a character string listing of the bases" Mac version $199 This program will generate coordinate output files for further use with programs that use cartesian or z-matrix coordinates. MOLECULES " you can build-up a structure in 3 dimensions, using z-matrix (angles & distances) or cartesian coordinates. Once you have your structure, you can do "what ifs" by changing atoms, groups, etc" Mac Version $249 Molecular Applications Group 880 Lathrop Drive Stanford, CA 94305 MacImdad Once you have the molecular coordinates of a molecule, this program will allow you to manipulate the image. Runs on Mac contact the Molecular Applications Group at MAG@CELLBIO.STANFORD.EDU