Rainer.Fuchs%EMBL@PUCC.PRINCETON.EDU ("Rainer Fuchs ", EMBL Data Library) (08/09/90)
Here follows a short list of new programs or updates received since
1-Jul-1990. A small modification to the server software has been made to
facilitate downloading of split files: you have to specify part one only,
i.e. filename.uaa, and you will automatically receive all parts of a package.
Those who have never used the file server before should send a mail message
to NETSERV@EMBL.BITNET and include the lines
HELP
HELP SOFTWARE
to get information on how to access the server.
DOS:
----
EPIPLOT.UUE - Prediction of B and T cell epitopes from protein sequences
(L. Menendez-Arias, CABIOS 6 (1990), 101-105)
MARS.UUE - Finds sites in DNA sequences which can easily be changed
into restriction sites by one or two base exchanges
(J. de Boer)
PRNTGL.UUE - Prints HGPL files (like GCG output) on matrix or laser
printer
(C. Ravitz)
SEQAIDFD.UAA - New version 3.7 of this sequence analysis package
(D. Roufa)
Mac:
----
CGR.HQX - Chaos Game Representation of DNA sequences
(H. Lehvaslaiho)
MACPATTERN.HQX - Pattern searching using Prosite database
(R. Fuchs)
VAX/VMS:
--------
CKIT.UUE - Toolbox of C routines for writing sequence analysis prgs
(W. Gilbert)
FASTEMBL.COM - DCL shell for submitting EMBL Mail-FASTA searches
(E. Sonnhammer)
MSE.UUE - Multiple sequence editor
(W. Gilbert)
READSEQ.UUE - General sequence format conversion program
(D. Gilbert)
SEQEDT.UUE - Sequence editor, modelled on EDT
(W. Gilbert)
Unix:
-----
GM.UAA - Analysis of unknown DNA sequences
(C. Fields)
MASE.UAA - Multiple sequence editor
(D. Faulkner, TIBS 13 (1989), 321-322)
MFASTA.UUE - Script for using EMBL/GenBank Mail-FASTA services
(T. de Boer)
PLSEARCH.UAA - Pattern detection in protein sequences
(R. Smith)
PROSEARCH.UUE - Pattern searching in proteins using Prosite
(L. Kolakowski)
SIGSEQ.UUE - Prediction of signal sequence cleavage sites
(A. Popowicz, CABIOS 4 (1988), 405-406)
TREEALIGN.UUE - Multiple sequence alignment and phylogeny
(J.Hein, Meth. Enzymol. 183 (1990))
Rainer Fuchs, Ph.D.
EMBL Data Library
fuchs@embl.bitnet