[bionet.software] How to make use of databases?

userCU11@mts.ucs.UAlberta.CA (Chris Upton) (02/22/91)

I've been following the workstation vs micro debate with some
interest! I can see the argument from both sides.
   Currently, I'm in the process of setting up a Sparcstation in
our department to service 15 to any many as I can cajoal. My plan
is to run the IG-suite to provide access to the DNA and protein
databases with some analysis tools. 
  Users will interface via MACs linked to the Ethernet by a 
Gatorbox. Many would be users are worried about the difficulty
of using the system, even learning the few UNIX commands needed
to keep their HOME tidy. They are happy with DNA Strider, DNA
Inspector or MacVector. I would just like to save everyone the
trouble of maintaining the growing databases and provide some 
other utilities. I have just installed MASE.
 My difficulties stem from my lack of experience with UNIX and
total ignorance of programming. While I've managed to put the
system together and run it after a fashion, I would not have
survived without the help of others. It seems essential to have
a UNIX EXPERT on hand, for instance I thought about using 
ProSearch with the TFD....  OK I have to get awk (???)...
OK, then I'm supposed to "patch awk".... OK, I'd better go and
beg help. This is all supposed to done in my 'spare time'.
  I think instructions will have to be laid out better before
these programs and systems catch on. And I'm an out and out
supporter.
  Also I know there's a lot of very useful stuff out there,
eg LiMB, TFD, SEQANALREF, EPD....  all useful databases. But I
haven't seen much information on the best way to utilise them.
What programs will search them on UNIX? What databases could be
used on the MAC? How best can they be used? If I can't figure
this out, then I can't pass them on to others who don't even know
what they're missing!! An example of a GOOD system is MacPattern
for searching PROSITE, great documentation. Just get from a server
and paste the files together, binhex, unstuff, print the manual,
read the intro and it's up and running!
  
OK apologies for going on so long,
 
Chris Upton  usercu11@mts.ucs.ualberta.ca