Peter.Rice@EMBL-HEIDELBERG.DE (Peter Rice) (03/26/91)
My posting about a GCG boxed alignment program has generated quite a few requests for more information. I am hoping to complete the latest updates to the program in time for it to be included with GCG 7.0 in the UNSUPPORTED saveset. That means it will be distributed with the GCG package (unless you get it on 1600 bpi tapes, as there may not be enough room on the tape). I will also make a copy available using the EMBL NETSERV, which you can use by sending E-mail with the text HELP to NETSERV@EMBL-Heidelberg.DE (or NETSERV@EMBL.bitnet), and exploring the SOFTWARE directory. The server has Mac, VAX, Unix and PC programs. The boxed alignment program should be included on NETSERV early in April. regards, Peter Rice ----------------------------------------------------------------------------- Peter Rice, EMBL | Post: Computer Group | European Molecular Internet: Peter.Rice@EMBL-Heidelberg.DE | Biology Laboratory EARN/Bitnet: rice@embl.bitnet | Postfach 10-2209 | D-6900 Heidelberg Phone: +49-6221-387247 | Germany
rodrigol@ulrik.uio.no (Rodrigo Lopez) (03/27/91)
In article <9103252258.AA20111@genbank.bio.net>, Peter.Rice%EMBL@PUCC.PRINCETON.EDU (Peter Rice) writes: > Dan, > > >I'm looking for a program which will allow me to draw boxes around identical > >residues in a multiple seqence alignment. > > > >..... > > > >Surely some of the alignment programs can do this. One which will run on a PC > >DOS system is preferable but a MAC would be OK too. The third option is an IBM > >mainframe running VM/CMS. > >I'd appreciate any information that you can provide, be it the program name or > >an FTP site which holds it. Thanks. > > Well, you did say "any information". I have a program that uses the GCG package > to do this, which means it can run on VAX/VMS and soon probably Unix (when GCG > is converted). Sadly this does not include any of the three system you listed, > but perhaps you have access to others. > > Peter Rice > > ------------------------------------------------------------------------ ------ > Peter Rice, EMBL | Post: Computer Group > | European Molecular > Internet: Peter.Rice@EMBL-Heidelberg.DE | Biology Laboratory > EARN/Bitnet: rice@embl.bitnet | Postfach 10-2209 > | D-6900 Heidelberg > Phone: +49-6221-387247 | Germany Peter, Which program? ************************************************************************ **** * RODRIGO LOPEZ SERRANO Biotechnology Centre of Oslo * * Tel: xx-02-958766 Gaustadalleen 21 * * Fax: xx-02-694130 P.B. 1125 Blindern * * 0316 Oslo 3 Norway * * rodrigol@biomed.uio.no * * rodrigol@ulrik.uio.no * ************************************************************************ ****