POSTMAST@gunbrf.bitnet (04/26/91)
From: edu%"prschneeman@ucdavis.edu" 25-APR-1991 16:32:37.17
To: bio-soft@genbank.bio.net
CC:
Subj: an amino acid seqence query
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From: prschneeman@ucdavis.edu (Paul Schneeman)
To: bio-soft@genbank.bio.net
Subject: an amino acid seqence query
Dear Folks--
We have a PDB file which gives the coordinates of the alpha-carbons only
of a protein, along with the residue sequence itself. The question is--
is there an easy, publicly available program available to add the estimates
in for all the other atoms? Any suggestions will be appreciated.
Thanks in advance
Paul Schneeman, UCDavis
prschneeman@ucdavis.eduPOSTMAST@gunbrf.bitnet (04/26/91)
First, pardon me for accidently reposting the original query. Since it
happened, I will not repeat the message in this reply.
Some commercial molecular modeling do make provision for doing this, but no
public domain programs yet that I am aware of. One method for doing it was
recently published.
@article{alphaonly,
author = "Liisa Holm and Chris Sander",
title = "Database Algorithm for Generating Protein Backbone and Side-chain
Co-ordinates from a {C$^\alpha$} Trace",
year = 1991,
journal = "J. Mol. Biol.",
volume = "218",
pages = "183-194"}
------------------------------------------------------------------------
Dr. John S. Garavelli
Database Coordinator
Protein Identification Resource
National Biomedical Research Foundation
Washington, DC 20007
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