lfk@eastman1.mit.edu (Lee F. Kolakowski) (04/27/91)
I have the Fitch programs for doing the automatic translation of genbank data that i receive over the net. It fails quite regularly, (my hacks on it not withstanding). Are there any new programs to take a Genbank file with the *new* features table info, and turn it into protein? especially where the coding sequence is split across several entries. -- Frank Kolakowski ======================================================================= |lfk@athena.mit.edu or lfk@eastman1.mit.edu or kolakowski@wccf.mit.edu| | Lee F. Kolakowski M.I.T. | | Dept of Chemistry Room 18-506 | | 77 Massachusetts Ave. Cambridge, MA 02139 | | AT&T: 1-617-253-1866 #include <disclaimer.h> | ======================================================================= ||Desert Storm - Lasers have made this the cleanest *dirty war* ever.|| =======================================================================
kristoff@genbank.bio.net (David Kristofferson) (04/27/91)
We have software which we use to translate the daily updates at GOS. We also still have occasional problems here and can not say that the software is ready for general release. Translating the entire flat file database has also proved to be a tougher problem than we anticipated. We are continuing to investigate the situation and will distribute the software when the problems are ironed out. In the meantime you can FTP the GenPept updates on a daily basis from genbank.bio.net instead of trying to process them yourself. Sincerely, Dave Kristofferson GenBank Manager kristoff@genbank.bio.net