dbd@THEORY.BCHS.UH.EDU (Dan Davison) (02/13/91)
The following files have been added to the Dos, Unix, VMS, and Mac archives on the UH Gene-Server. To get an index, send the line SEND DOS INDEX or SEND UNIX INDEX or SEND VMS INDEX or SEND MAC INDEX to gene-server@bchs.uh.edu gene-server%bchs.uh.edu@CUNYVM from BITNET The general HELP file (HELP to the above address will retrieve the file) lists addresses from other networks. New files: Mac: 188868 Feb 4 19:18 macpattern123.hqx New ProSite search engine 150862 Jan 15 14:10 mactargsearch2.hqx Protein motif search engine 349753 Feb 4 19:17 dnatranslator.hqx Hypercard (2.0) stak Dos: 116699 Feb 12 22:46 prosea12.uue New ProSite search engine for DOS Feb 12 23:20 sim-src.uue DOS version of multiple seq align. source code only -- executables to follow. VMS: 201069 Feb 12 22:46 prosearch12.dclshar Prosite search engine for VMS, requires Gnu Awk Unix: 82813 Feb 12 22:47 prosearch_1.2.shar or .uue Prosite search engine for Unix The GenBank files on the server are updated weekly and a bug in the accession number index updating has been fixed. dan davison -- dr. dan davison/dept. of biochemical and biophysical sciences/univ. of Houston/4800 Calhoun/Houston,TX 77054-5500/davison@uh.edu/DAVISON@UHOU Disclaimer: As always, I speak only for myself, and, usually, only to myself.
Davison@UH.EDU (Dan Davison) (06/27/91)
A lot of software has been added to the UH Gene-Server in the past few days. This note details the additions. There's something for everyone here! Note especially the multiple sequence alignment editors for VMS (MALIGNED by Steve Clark), Unix (GDE, Genetic Data Environment by Steve Smith) and PIMA,(Pattern Induced Multiple Alignment by Randy Smith), and the Mac (MSE, by Ralph Gonzalez). You now have no excuse not to have one... All files are now avaiable via anonymous FTP from menudo.uh.edu, 129.7.1.6, in ~ftp/pub/genbank-server/vms, unix, dos, or mac. N.B. All GenBank files have been updated also. VMS: 204800 Jun 26 22:19 maligned.uue Steve Clark's MALIGNED multiple sequence alignment editor (great name!) Note the size... 91921 Jun 26 22:12 scrutine.uaa Newest SCRUTINEER, analysis for VMS 91922 Jun 26 22:12 scrutine.uab 91922 Jun 26 22:12 scrutine.uac 91922 Jun 26 22:12 scrutine.uad 91922 Jun 26 22:12 scrutine.uae 91922 Jun 26 22:12 scrutine.uaf 91922 Jun 26 22:12 scrutine.uag 91922 Jun 26 22:12 scrutine.uah 91922 Jun 26 22:12 scrutine.uai 91923 Jun 26 22:12 scrutine.uaj 91923 Jun 26 22:12 scrutine.uak 22754 Jun 26 22:12 scrutine.ual 84071 Jun 26 22:26 boxshade.uue K. Hoffman's shading sequence pgm MAC 97986 Jun 26 22:01 dbconv1.hqx Convert flat file to tab-delimited 46765 Jun 26 22:01 dbconv2.hqx by J. Valverde 97990 Jun 26 22:01 embl-search1.hqx R. Fuchs db retrieval for EMBL 48613 Jun 26 22:01 embl-search2.hqx CD-ROM only 97988 Jun 26 22:00 seqspeak1.hqx Sequence entry with sound 98072 Jun 26 22:00 seqspeak2.hqx by K. Conover 30110 Jun 26 22:00 seqspeak3.hqx 653681 Jun 26 22:24 internet-tour.hqx A tour of the Internet 6808 Jun 26 22:24 internet-tour.readme readme for above 9073 Jun 26 22:52 mse.hqx Hypercard 2.0 stak for up to 6-seq align & ed UNIX 242 Jun 26 20:22 gde.readme Genetic Data Environment by S. Smith, readme 185961 Jun 26 20:21 gde1.0.uaa version 1.0 tar file 186000 Jun 26 20:21 gde1.0.uab 9064 Jun 26 20:21 gde1.0.uac 131874 Jun 26 20:21 gdeps.uue uuencoded, compress postscript doc file 185965 Jun 26 20:21 gdesrc.uaa complete source code for GDE 186000 Jun 26 20:21 gdesrc.uab 21980 Jun 26 20:21 gdesrc.uac 27815 Jun 26 20:23 gdetxt.uue uuencoded text file of ps doc file 92963 Jun 26 20:24 pima.uaa Randy Smith's Pattern Induced Multiple 93000 Jun 26 20:24 pima.uab Alignment (PIMA) program, version 1.0 93000 Jun 26 20:24 pima.uac 93000 Jun 26 20:24 pima.uad 93000 Jun 26 20:24 pima.uae 93000 Jun 26 20:24 pima.uaf 93000 Jun 26 20:24 pima.uag 33926 Jun 26 20:24 pima.uah 70177 Jun 26 22:29 overseer.uue Nucleic acid sequence analysis DOS 91915 Jun 26 21:56 cutcost.uaa New version. Estimate cost of restiction 14568 Jun 26 21:56 cutcost.uab enzyme use. C.G. Meinhof 91918 Jun 26 21:56 prograph.uaa New version of Prograph, protein 91921 Jun 26 21:56 prograph.uab sequence analysis package by 91921 Jun 26 21:56 prograph.uac K. Hoffman 91921 Jun 26 21:56 prograph.uad 25839 Jun 26 21:56 prograph.uae 95068 Jun 26 22:14 dnaclone.uaa Revised DNACLONE, clone 95071 Jun 26 22:14 dnaclone.uab and strain management 85386 Jun 26 22:14 dnaclone.uac 88005 Apr 23 1990 dnaclone.uue To get started with the UH Gene-Server send the word HELP to gene-server@bchs.uh.edu or gene-server%bchs.uh.edu@CUNYVM from BITNET. Briefly, to retrieve any file use the command (for example) send unix pima.uaa pima.uab pima.uac and you can subsitute "dos", "vms", or "mac" for "unix" in the above. These files will be appearing on the EMBL, FUNET, and IUBIO servers soon. Questions will be answered as time permits. dan -- dr. dan davison/dept. of biochemical and biophysical sciences/univ. of Houston/4800 Calhoun/Houston,TX 77204-5934/davison@uh.edu/DAVISON@UHOU Disclaimer: As always, I speak only for myself, and, usually, only to myself.