droufa@matt.ksu.ksu.edu (Donald J Roufa) (06/12/91)
Does anyone know of a database cataloging nuclear transcription factor
binding sequences in cloned DNAs? Specifically, I am interested in
finding a comprehensive listing of DNA motifs known to interact with
mammalian transcription factors. It would be ideal if the database
were accessible by ftp or e-mail.
Thanks for any help you can offer.
--
Don Roufa E-Mail: DROUFA@MATT.KSU.KSU.EDU // | / /--- | |
Division of Biology DROUFA@KSUVM.KSU.EDU // |/ |__ | |
Kansas State Univ. Tel: (913) 532-6641 // |\ | | |
Manhattan, KS 66506 Fax: (913) 532-6653 // | \ \__/ \__/ksk@ksksun.bioc.aecom.yu.edu (Ken Krauter) (06/12/91)
In article <1991Jun12.040103.14290@maverick.ksu.ksu.edu>, droufa@matt.ksu.ksu.edu (Donald J Roufa) writes: |> Does anyone know of a database cataloging nuclear transcription factor |> binding sequences in cloned DNAs? Specifically, I am interested in |> finding a comprehensive listing of DNA motifs known to interact with |> mammalian transcription factors. It would be ideal if the database |> were accessible by ftp or e-mail. |> |> Thanks for any help you can offer. |> -- |> Don Roufa E-Mail: DROUFA@MATT.KSU.KSU.EDU // | / /--- | | |> Division of Biology DROUFA@KSUVM.KSU.EDU // |/ |__ | | |> Kansas State Univ. Tel: (913) 532-6641 // |\ | | | |> Manhattan, KS 66506 Fax: (913) 532-6653 // | \ \__/ \__/ Me too!!!
donnel@helix.nih.gov (Donald A. Lehn) (06/12/91)
In article <516@alsys1.aecom.yu.edu> ksk@ksksun.bioc.aecom.yu.edu (Ken Krauter) writes: ->In article <1991Jun12.040103.14290@maverick.ksu.ksu.edu>, droufa@matt.ksu.ksu.edu (Donald J Roufa) writes: ->|> Does anyone know of a database cataloging nuclear transcription factor ->|> binding sequences in cloned DNAs? Specifically, I am interested in ->|> finding a comprehensive listing of DNA motifs known to interact with ->|> mammalian transcription factors. It would be ideal if the database ->|> were accessible by ftp or e-mail. ->|> ->|> Thanks for any help you can offer. ->|> -- ->|> Don Roufa E-Mail: DROUFA@MATT.KSU.KSU.EDU // | / /--- | | ->|> Division of Biology DROUFA@KSUVM.KSU.EDU // |/ |__ | | ->|> Kansas State Univ. Tel: (913) 532-6641 // |\ | | | ->|> Manhattan, KS 66506 Fax: (913) 532-6653 // | \ \__/ \__/ -> ->Me too!!! There are two databases of promoter elements avaliable. One is the Eukaryotic Promoter Database (EPD) and the other is the the Transcription Factor Database (TFD). You can get info on these by mailing the following to the server at EMBL: Address: netserve@embl.bitnet content of mail message: DIR TFD DIR EPD HELP TFD HELP EPD The EMBL server will then mail you files on how to get and use the files. I believe that these files can also be obtained at one of the following FTP sites: NCBI.NLM.NIH.GOV MENUDO.UH.EDU IUBIO.BIO.INDIANA.EDU Best regards, Don Lehn
mfarrall@crc.ac.uk (Martin Farrall) (06/13/91)
There is a program (and associated database) SIGSCAN which contains the data you are interested in which is obtained from: Dan Prestridge T-10, MS K710 Los Alamos National Laboratory Los Alamos, NM 87545 U.S.A. e-mail: DXP%LIFE@GOV.LANL Hope this is of help Martin Farrall Molecular Medicine CRC Watford Road Harrow HA1 3UJ, UK mfarrall@crc.ac.uk