GilbertD@IUBio.Bio.Indiana.Edu (Don Gilbert) (02/27/90)
Archive-name: readseq/26-Feb-90
Original-posting-by: GilbertD@IUBio.Bio.Indiana.Edu (Don Gilbert)
Original-subject: Reading and translating sequence formats
Archive-site: iubio.bio.indiana.edu [129.79.1.101]
Archive-directory: [archive.molbio.readseq]
Reposted-by: emv@math.lsa.umich.edu (Edward Vielmetti)
ReadSeq is a set of program source code routines that will read nucleic
acid and protein sequences stored in the following formats:
Stanford/IG, Genbank, NBRF, EMBL, GCG, DNAStrider, Fitch, Pearson,
and Zuker.
As well, it will convert a file to a new format. Data files may have
multiple sequences.
The program is available in C and Pascal flavors. The C version includes
command line and batch processing of files, and is written in ANSI C, and
works with many micro and macro computers. The pascal version is UCSD
style. This source code, copyrighted by me, may be freely copied and used
by anyone. Developers are encourged to incorporate parts in their
programs, rather than devise their own private sequence format.
You can get ReadSeq from the anonymous ftp archive at IuBio (ftp
iubio.bio.indiana.edu, user anonymous), in the directory
[archive.molbio.readseq].
-- Don
Don Gilbert biocomputing office / archive for
gilbertd@iubio.bio.indiana.edu / molecular & general biology
biology dept., indiana univ., / ftp iubio.bio.indiana.edu
bloomington, in 47405, usa / (129.79.1.101) user anonymous