[bionet.general] Source Code for Optimal Alignments in Linear Space

KRISTOFFERSON@BIONET-20.ARPA (03/30/88)

From: David Kristofferson <Kristofferson@BIONET-20.ARPA>


The software described by Dr.'s Eugene Myers and Webb Miller in their
CABIOS article "Optimal Alignments in Linear Space" (CABIOS. vol. 4
no. 1, pp. 11-17, 1988) is available on BIONET for downloading or via
e-mail from bionet@bionet-20.arpa.  C source code is provided for
producing optimum sequence alignments while minimizing the use of
computer memory.  The files are in the BC: directory and are named

BC:LINEAR.H
BC:LINEAR.C
BC:SAMPLE.C

To download the files using Kermit, for example, issue the command

kermit send bc:linear.h

at the @ prompt and then alert your PC Kermit to receive the file.
Use similar commands to send the other two files.  Information about
transfering files via Kermit and other protocols is given under HELP
FILE-TRANSFER at the @ prompt on BIONET.

BIONET has not tested and does not support this code.  Please refer
any questions to the authors at the addresses indicated in the CABIOS
article.

				Sincerely,

				Dave Kristofferson
				BIONET Resource Manager

				kristofferson@bionet-20.arpa


BIONET Users:  Please refer to HELP SOFTWARE for information about
contributed software.
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