[net.religion] Time and the Amino Acid Motorcycle

wetcw@pyuxa.UUCP (T C Wheeler) (07/23/84)

I have been following this 'time enough' argument and can see a hole in
the 'not enough time' argument.  You guys are assuming that the trys
at combinations are taking place one after another, or in serial.  Well,
if you have this gigantic pot of soup in which these 'trys' are taking
place, wouldn't it be more of a parallel action?  Wouldn't 'biwions and
biwions' (sorry Sagan) of 'trys' be occurring at once, given a whole
ocean full of the stuff?  Only one try a second is begging the question.
Do raindrops fall once per second?  No, and neither do chemical reactions
occur on a serial basis.  Remember the old 'magic' reaction where a
liquid is turned instantly from clear to blue due to chemical reaction?
This is not a serial reaction, it is parallel.  I submit that the 
'search' for an amino acid would have taken place in a parallel format
which would have included ALL of the soup, not just one small portion
of it?  Now, all you guys go back to your calculators and figure out
how much soup there was, then add in your time factor.  In other words,
given a finite amount of soup, and the amount of time the universe
has been around (combinations could have been taking place even before
the formation of the earth), how long would it take to hit the amino
acids?  I think this puts a different light on the subject.

Further, once the first 'hit' is made (the first combination needed
in building the acid) how much shorter or longer is the time factor
in making the second 'hit' (the second combination factor needed to
build the acid)?  Could succeding 'trys' or 'hits' be shortened?  
Would the combination factors needed to put together an amino acid
be a dominant reaction.  That is, in many chemical reactions, there
are primary or dominant reactions and secondary reactions, right?
Would the formation of an amino acid have been a dominant reaction,
thus subordinating other reactions?

These are all just questions that have been bothering me since
this subject came up.  Anyone want to reply?
T. C. Wheeler

dann@bmcg.UUCP (07/25/84)

Regarding the discussion between Lyle McElhaney & Bob Brown:

If I remember my Scientific American articles in the area of
biochemistry, Lyle's argument about H2O does not apply here.
There are something like 20 different amino acids.  Each  of
them  has a pair of chemical bonding areas, one on each side
of the molecule, which are  identical  from  amino  acid  to
amino  acid.  Thus,  the  amino acids may be strung together
like beads with no particular preference as to the order  of
stringing.   In  a soup of amino acids, with nothing guiding
the assembly order, one sequence is as good as  another  and
any  results  are purely random.  Within a living cell, how-
ever, the order of protein  assembly  from  amino  acids  is
carefully directed by DNA and RNA templates.

There is one added complication.  Many proteins are "folded"
in  complex  fashions.   Portions  of  the amino acid chains
overlap and are fastened together with  weaker  side  bonds,
which  do  not  use  the  two  main connecting points on the
molecule.  Within a living cell, this folding and  fastening
is done by other complex proteins (called enzymes) which act
as catalysts.  So, even if  you  accidently  get  the  right
sequence  of  amino  acids to form a particular protein, you
still have to fold and attach the side bonds.  I think insu-
lin has only one side attachment.

Scientific American has published a book containing  a  col-
lection  of  articles describing this stuff. Really thought-
provoking, I highly recommend it to anyone interested.

By the way, insulin is really trivial by comparison to  many
other vital proteins.  Take a look at the structure of hemo-
globin sometime if you want to see a real work of art!

Dann McCreary
Burroughs Advanced Systems Group

{sdcsvax || ihnp4!sdcrdcf || cepu }!bmcg!dann